import gradio as gr import numpy as np from scipy.ndimage import uniform_filter, median_filter, gaussian_filter1d from skimage import exposure import matplotlib.pyplot as plt import io from PIL import Image # ---------- util ---------- def to_gray2d(arr): arr = np.array(arr, dtype=np.float32) if arr.ndim == 3 and arr.shape[2] in (3,4): arr = arr[..., :3].mean(axis=2) elif arr.ndim > 2: arr = np.squeeze(arr) if arr.max() > 1.0: arr = arr / 255.0 return arr.astype(np.float32) # ---------- pipeline ---------- def splitnormalize_balanced(img2d): p_lo, p_hi = np.percentile(img2d, [2, 98]) x = np.clip((img2d - p_lo) / (p_hi - p_lo + 1e-6), 0, 1) x = exposure.equalize_adapthist(x, clip_limit=0.003, nbins=256) return x.astype(np.float32) def removebias(img2d, regionwidth=10, fraction=0.75): kz = 2*regionwidth + 1 kx = 2*regionwidth + 1 bg = uniform_filter(img2d, size=(kz, kx)) out = img2d - fraction * bg out = (out - out.min()) / (out.max() - out.min() + 1e-6) return out.astype(np.float32) def estimate_medline_intensity(img2d): H, W = img2d.shape p1, p99 = np.percentile(img2d, [1, 99]) norm = np.clip((img2d - p1) / (p99 - p1 + 1e-6), 0, 1) z_low, z_high = int(0.30*H), int(0.70*H) return (np.argmax(norm[z_low:z_high, :], axis=0) + z_low).astype(np.float32) def detect_rpe_simple(img2d, medline): H, W = img2d.shape sm = gaussian_filter1d(img2d, sigma=4, axis=0) grad = np.gradient(gaussian_filter1d(sm, sigma=1, axis=0), axis=0) z0, z1 = int(0.30*H), int(0.85*H) return (np.argmax(-grad[z0:z1, :], axis=0) + z0).astype(np.float32) def linesweeter(y): from scipy.signal import savgol_filter return savgol_filter(y, 9, 2).astype(np.float32) def overlay(img2d, curve, title=""): H, W = img2d.shape x = np.arange(W) fig, ax = plt.subplots(figsize=(8,4)) ax.imshow(img2d, cmap="gray") ax.plot(x, curve, 'r-', lw=2) ax.set_title(title); ax.axis('off') buf = io.BytesIO(); plt.savefig(buf, format="png", bbox_inches="tight"); buf.seek(0) return Image.open(buf) # ---------- UI ---------- with gr.Blocks(title="OCT Step-by-Step Visual Lab") as demo: gr.Markdown("## 🧠 OCT Step-by-Step Visual Lab — Compare cada etapa lado a lado") img_state = gr.State() # guarda a imagem 2D corrente (float [0,1]) with gr.Tab("1) Carregar Imagem"): img_input = gr.Image(label="Imagem OCT", type="numpy") def store(img): return to_gray2d(img) if img is not None else None img_input.change(store, inputs=img_input, outputs=img_state) with gr.Tab("2) Normalização"): btn_norm = gr.Button("Aplicar splitnormalize (balanced)") before_norm = gr.Image(label="Antes") after_norm = gr.Image(label="Depois") def do_norm(img2d): img2d = to_gray2d(img2d) out = splitnormalize_balanced(img2d) return img2d, out, out # antes, depois, novo estado btn_norm.click(do_norm, inputs=img_state, outputs=[before_norm, after_norm, img_state]) with gr.Tab("3) Remove Bias"): btn_bias = gr.Button("Aplicar removebias") before_b = gr.Image(label="Antes") after_b = gr.Image(label="Depois") def do_bias(img2d): img2d = to_gray2d(img2d) out = removebias(img2d) return img2d, out, out btn_bias.click(do_bias, inputs=img_state, outputs=[before_b, after_b, img_state]) with gr.Tab("4) Mediana 5Ɨ9"): btn_med = gr.Button("Aplicar filtro mediano (5x9)") before_m = gr.Image(label="Antes") after_m = gr.Image(label="Depois") def do_med(img2d): img2d = to_gray2d(img2d) out = median_filter(img2d, size=(5,9)).astype(np.float32) return img2d, out, out btn_med.click(do_med, inputs=img_state, outputs=[before_m, after_m, img_state]) with gr.Tab("5) Estimar Medline (IS/OS)"): btn_medline = gr.Button("Calcular Medline") out_medline = gr.Image(label="Visualização") def show_medline(img2d): img2d = to_gray2d(img2d) med = estimate_medline_intensity(img2d) return overlay(img2d, med, "Medline (IS/OS)") btn_medline.click(show_medline, inputs=img_state, outputs=out_medline) with gr.Tab("6) Detectar RPE"): btn_rpe = gr.Button("Detectar RPE simples") out_rpe = gr.Image(label="Visualização") def step_rpe(img2d): img2d = to_gray2d(img2d) med = estimate_medline_intensity(img2d) rpe = detect_rpe_simple(img2d, med) return overlay(img2d, rpe, "RPE simples") btn_rpe.click(step_rpe, inputs=img_state, outputs=out_rpe) with gr.Tab("7) Suavização da RPE"): btn_smooth = gr.Button("Suavizar RPE (linesweeter)") out_smooth = gr.Image(label="Visualização") def step_smooth(img2d): img2d = to_gray2d(img2d) med = estimate_medline_intensity(img2d) rpe = detect_rpe_simple(img2d, med) rpe_s = linesweeter(rpe) return overlay(img2d, rpe_s, "RPE suavizada (linesweeter)") btn_smooth.click(step_smooth, inputs=img_state, outputs=out_smooth) demo.launch()