Fix pkg resources issue

Fix pkg resources issue

Remove unused methods

Add accepted name to results

Add `inchikey` to results handling logic and adjust usage of previous results

Replace unused DOI logic with file name display and adjust `file_name_text` function.

Comment out unused DOI display logic and update `doi_text` function docstring for clarity

Refactor compound handling: replace `compounds` with `verified_compounds` and enhance taxa filtering logic so that only accepted pairs are considered

Update dependency versions

Update dependency versions

Update dependency versions

Update dependencies

Update dependencies

Update dependencies: add langchain_core, typing, and langchain_deepseek to requirements.txt

Split pip install commands in Dockerfile for better readability and maintainability.

Simplify Dockerfile: consolidate pip install commands for multiple repositories into a single command.

Handle missing compounds in taxa lists and add exception handling for compound indexing.

Switch to using json for serialization

Update UI: add DOI display functionality, adjust layout, and clean up unused dependencies.

Update dependencies: add pydantic to requirements.txt

Update dependencies: add pydantic to requirements.txt

Add string cleaning methods and structured output schema for taxa extraction; adjust app UI layout.

Refactor app: update UI elements, improve file handling, and implement download functionality for results.

Refactor app and helper functions: streamline file processing, simplify logic, and remove unused code.

Initial commit

Initial commit

Initial commit

initial commit

Duplicate from posit/shiny-for-python-template