aelleeyy commited on
Commit
730c8b7
·
1 Parent(s): 2bca903

Add CheXbert: clone repo in Docker, download weights from HF Hub at startup

Browse files
Files changed (2) hide show
  1. Dockerfile +9 -0
  2. main.py +17 -0
Dockerfile CHANGED
@@ -16,11 +16,20 @@ RUN pip install --no-cache-dir -r requirements.txt
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  RUN python -c "import nltk; nltk.download('punkt'); nltk.download('punkt_tab')"
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  COPY inference/ ./inference/
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  COPY main.py .
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  RUN mkdir -p /tmp/results
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  EXPOSE 7860
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  CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "7860"]
 
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  RUN python -c "import nltk; nltk.download('punkt'); nltk.download('punkt_tab')"
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+ # Clone Stanford CheXbert (public repo — only source code, no weights)
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+ RUN git clone --depth 1 https://github.com/stanfordmlgroup/CheXbert.git /app/CheXbert
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+
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+ # Install CheXbert's own dependencies
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+ RUN pip install --no-cache-dir scikit-learn tqdm || true
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+
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  COPY inference/ ./inference/
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  COPY main.py .
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  RUN mkdir -p /tmp/results
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+ ENV CHEXBERT_DIR=/app/CheXbert
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+ ENV CHEXBERT_CKPT=/app/CheXbert/src/chexbert.pth
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+
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  EXPOSE 7860
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  CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "7860"]
main.py CHANGED
@@ -38,6 +38,23 @@ app.add_middleware(
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  @app.on_event("startup")
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  async def load_model():
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  from inference.model import get_model, get_tokenizer
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  get_model()
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  get_tokenizer()
 
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  @app.on_event("startup")
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  async def load_model():
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+ import os
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+ from huggingface_hub import hf_hub_download
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+
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+ # Download chexbert.pth if not already present
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+ chexbert_ckpt = os.environ.get("CHEXBERT_CKPT", "/app/CheXbert/src/chexbert.pth")
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+ if not os.path.exists(chexbert_ckpt):
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+ print("📥 Downloading chexbert.pth from HuggingFace Hub...")
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+ os.makedirs(os.path.dirname(chexbert_ckpt), exist_ok=True)
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+ hf_hub_download(
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+ repo_id="alyrraza/radguard-v11",
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+ filename="chexbert.pth",
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+ local_dir=os.path.dirname(chexbert_ckpt),
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+ )
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+ print("✅ chexbert.pth downloaded")
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+ else:
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+ print("✅ chexbert.pth already present")
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+
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  from inference.model import get_model, get_tokenizer
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  get_model()
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  get_tokenizer()