7.7.18.48

major update. Introduce a new paradigm change from procedure to object
oriented design.
+ created all the base classes and their derivatives as per object
relationship

remark: this is my first attempt in OOD. may discard due to the
development cycle.

On branch OOD
Changes to be committed:
modified: .gitignore
new file: article.py
new file: instruction.py
modified: requirements.txt
new file: ui.py

.gitignore

@@ -1,5 +1,7 @@
 .archive
 .venv
+.external
+.vscode
 .samples
 .data
 .outputs
@@ -11,7 +13,4 @@
 __pycache__
 __pycache__/*
 
-prompt*.txt
-feedback*.txt
-output*.txt
 ```

article.py

@@ -0,0 +1,57 @@
+from typing import Optional, List, Dict
+from enum import Enum
+
+from pydantic import BaseModel, Field
+# from langchain. import 
+
+
+class Article(BaseModel):
+    id: int
+    title: str
+    content: str
+
+class Table(BaseModel):
+    title: str = Field(None, alias="title")
+    fields: List[str] = Field(None, alias="Table column headings")
+    content: Optional[str] = Field(None, alias="Table content body")
+
+class Summary(BaseModel):
+    tables: Optional[List[Table]] = Field(None, alias="tables")
+
+class Assessment(Enum):
+    overview = "overview"
+    clinical = "clinical"
+    radiological = "radiological"
+    safety = "safety"
+    other = "other"
+
+class Parameter(BaseModel):
+    name: str
+    value: str
+    unit: str
+    condition:Optional[str] = Field(None, alias="condition")
+    assessment:Assessment = Field(None, description="The clinical trail assessment steps")
+
+class Preference(BaseModel):
+    name: str
+    params: List[Parameter] = Field(None, alias="parameters")
+
+class ArticleCollection(BaseModel):
+    articles: List[Article] = Field(None, alias="articles")
+    summary: Optional[Summary] = Field(None, alias="summary")
+    preferences: Preference = Field(None, alias="preferences")
+
+class ClinicalStudy(Article):
+    tables: Optional[List[Table]] = Field(None, alias="tables")
+    acceptance_year: Optional[int] = Field(None, alias="acceptance_year")
+    acceptance_month: Optional[int] = Field(None, alias="acceptance_month")
+    sections: Optional[Dict[str]] = Field(None, alias="sections")
+    sectionCollection: Optional[Dict[str]] = Field(None, alias="sectionCollection")
+
+class DeviceIMF(Article):
+    tables: Optional[List[Table]] = Field(None, alias="tables")
+    sections: Optional[List[str]] = Field(None, alias="sections")
+    sectionCollection: Optional[List[str]] = Field(None, alias="sectionCollection")
+
+
+

instruction.py

@@ -0,0 +1,26 @@
+
+
+from pydantic import BaseModel, Field
+from typing import Optional, List, Dict
+from enum import Enum
+
+class Term(BaseModel):
+    id: int
+    terms: List[str] = Field(None, alias="terms")
+
+class PostParser(BaseModel):
+    id: int
+    name: str
+    terms: List[str] = Field(None, alias="terms")
+                             
+class PostParser(BaseModel):
+    id: int
+    name: str
+    terms: List[str] = Field(None, alias="terms")
+
+class Instruction(BaseModel):
+    name: str
+
+class InstructionClassifier(BaseModel):
+    terms: List[Term] = Field(None, alias="terms")
+    instruction: Instruction = Field(None, alias="instruction")

requirements.txt

@@ -1,8 +1,8 @@
-gradio
-pandas
-PyPDF2
-boto3
-requests
-openai
-pdfminer.six
-tiktoken
+gradio==3.35.2
+boto3==1.26.165
+requests==2.31.0
+openai==1.3.2
+pdfminer.six==20221105
+tiktoken==0.4.0
+pydantic==1.10.10
+langchain==0.0.336

ui.py

@@ -0,0 +1,38 @@
+import gradio as gr
+
+from article import *
+from pydantic import BaseModel, Field
+from typing import Optional, List, Dict
+
+class FileUpload(BaseModel):
+    file: bytes = Field(None, alias="file")
+
+class ArticleDisplay(BaseModel):
+    title: str = Field(None, alias="title")
+    content: str = Field(None, alias="content")
+
+class TableDisplay(BaseModel):
+    table: Optional[Table] = Field(None, alias="table")
+
+class StudyTabDisplay(ArticleDisplay):
+    file: FileUpload = Field(None, alias="file")
+    tables: Optional[List[Table]] = Field(None, alias="tables")
+
+class IMFTabDsiplay(ArticleDisplay):
+    imf: Optional[DeviceIMF] = Field(None, alias="Device IMF article object")
+
+class ArticleCollectionDisplay(BaseModel):
+    article_collection: Optional[ArticleCollection] = Field(None, alias="article_collection")
+
+class ParameterDisplay(BaseModel):
+    parameter: Optional[Parameter] = Field(None, alias="parameter")
+
+class PreferenceDisplay(BaseModel):
+    preference: Optional[Preference] = Field(None, alias="preference")
+    param_displays: Optional[List[ParameterDisplay]] = Field(None, alias="param_displays")
+
+class SummaryDisplay(BaseModel):
+    articles: Optional[ArticleCollectionDisplay] = Field(None, alias="articles")
+    summary: Optional[Summary] = Field(None, alias="summary")
+    preference: Optional[PreferenceDisplay] = Field(None, alias="preference")
+