8.8.21.64 cleaned up application.py data structure, abstract_inst and revised app_data setup to remove path tables and add summary table.

application.py

@@ -37,61 +37,11 @@ anatomic_domains=[
 '''
 dynamodb tables structure
 '''
-# data_structure = {
-#     "terms":{
-#         "key":[
-#             "assessment_step",
-#             "term"
-#         ],
-#         "fields":[
-#         "assessment_step",
-#         "term",
-#         "clinical term",
-#         "summary term",
-#         "template_name",
-#         "terms"
-#     ]},
-#     "prompts":{
-#         "key":[
-#             "assessment_step",
-#             "template_name"
-#         ],
-#         "fields":[
-#             "assessment_step",
-#             "template_name",
-#             "sections",
-#             "groups",
-#             "levels",
-#             "preoperatives",
-#             "prompt",
-#             "fields",
-#             "reformat_inst"
-#         ]
-#     },
-#     "articles":{
-#         "key":[
-#             "domain",
-#             "name"
-#         ],
-#         "fields":[
-#             "domain",
-#             "name",
-#             "content",
-#             "upload_time"
-#         ]
-#     },
-#     # "outputs":{
-#     #     "key":[
-#     #         "domain",
-#     #         "article"
-#     #     ],
-#     #     "fields":[
-#     #         "domain",
-#     #         "article",
-#     #         "outcomes"
-#     #     ]
-#     # }
-# }
+
+logic_keywords = {
+        "groups":["group"],
+        "preoperatives":["preoperative","preop","pre-op"]
+    }
 
 source_format = "<column 1 field>\n<value 1>\n<value 2>...<value n>\n<column 2 field>\n<value 1>\n<value 2>...<value n>\n...<column n field>\n<value 1>\n<value 2>...<value n>\n"
 
@@ -119,10 +69,6 @@ accepted_month_inst=[
     f"return the results on a single line as 'Accepted Month: <month>.",
 ]
 
-abstract_inst=[
-    f"Extract the abstract of the article from the system text, and return its original text. Normally, the abstract is before the introduction and might a paragraph, or in sections of study design, objective, summary of background, methods, results, and conclusion with keywords section in the end.",
-    ]
-
 '''
 application default data
 '''
@@ -131,5 +77,5 @@ app_data = {
     "articles":[],
     "prompts":{},
     "terms":[],
-    "paths":{}    
+    "summary":[]
 }