check point before switch branch

modified: .gitignore
modified: __pycache__/supplier.cpython-310.pyc
modified: app.py
deleted: ui_studies.py
deleted: ui_study.py
new file: ui_summary.py

.gitignore

@@ -6,6 +6,9 @@
 .prompts
 .vscode
 
+*.pyc
+*.csv
+
 sandbox.ipynb
 dump.ipynb
 test.ipynb

app.py

@@ -1,5 +1,3 @@
-# search_logic = gr.Interface(text_analysis,input="text",outputs="highlight",title="High light")
-
 # first layer extraction(text)
 # second layer extraction(first layer output)
 # third layer extraction(first layer outputs aggregated, second layer outputs aggregated)
@@ -10,33 +8,26 @@ import gradio as gr
 from cloud_db import *
 from supplier import *
 from utility import *
+from features import init_app_data
 
-from ui_study import *
-from ui_studies import *
-# from application import app_data
+from ui_summary import *
 
 
 examples = []
+# app_theme = gr.themes.Base(neutral_hue="blue")
 
-@terminal_print
-def init_demo():
-    '''
-    initialize the demo data
-    '''
-    study_page = init_study_page()
-    studies_page = init_studies_page()
-
-    return gr.TabbedInterface(
-                [study_page,studies_page],
-                ["Clinical Study","Studies"],
-                theme = gr.themes.Soft(primary_hue="sky",secondary_hue="orange"),
-                css = "footer {visibility: hidden}",
-                title="AMRA AI Medi Reader")
+demo = gr.TabbedInterface(
+    [summary_page], 
+    ["Summary"],
+    theme = gr.themes.Soft(primary_hue="sky",secondary_hue="orange"),
+    title="AMRA AI Medi Reader",
+    css = "footer {visibility: hidden}",
+    )
+# )
 
 def refresh_data():
     return
 
 if __name__ == "__main__":
     init_app_data()
-    demo = init_demo()
     demo.launch()

ui_studies.py

@@ -1,42 +0,0 @@
-import gradio as gr
-
-from application import *
-from features import init_app_data
-from utility import terminal_print
-
-def refresh():
-    init_app_data()
-    '''
-    refresh the literature report.
-    '''
-    return create_md_tables(app_data["articles"])
-
-
-def create_md_tables(articles):
-    '''
-    create markdown tables for the articles.
-    '''
-    md_text = ""
-    md_text += "| Domain | File Name | Upload Time | Device |\n| --- | --- | --- | --- |\n"
-
-    for article in articles:
-        md_table = f"| {article['domain']} | {article['name']} | {article['upload_time']} | {default_region} |\n"
-        md_text += md_table
-
-    return md_text
-
-@terminal_print
-def init_studies_page():
-    with gr.Blocks() as studies_page:
-        with gr.Row():
-            gr.Markdown("## Article Lists")
-            btn_refresh = gr.Button(value="Refresh",variant="primary")
-        gr.HTML("<hr>")
-        
-        article_list = gr.Markdown("")
-        
-        btn_refresh.click(
-            fn=refresh,
-            outputs=[article_list]
-        )
-    return studies_page

ui_study.py

@@ -1,105 +0,0 @@
-import gradio as gr
-
-from utility import *
-from application import *
-from features import *
-
-def reset():
-    '''
-    reset gradio input and output features in this page.
-    '''
-    return (
-        gr.Radio.update(value=anatomic_domains[-1]),
-        gr.Files.update(value=None),
-        gr.TextArea.update(value=""),
-        gr.Markdown.update(value=""),
-        gr.Markdown.update(value="")
-    )
-
-# complete user interfaces
-@terminal_print
-def init_study_page():
-    with gr.Blocks() as study_page:
-        # user control panel
-        with gr.Row(equal_height=False):
-            with gr.Column():
-                gr.Markdown("## Studies")
-                gr.HTML("<hr>")
-
-                upload_study = gr.File(label="Upload a clinical study report",type="file",file_count="multiple")
-                
-                
-            with gr.Column():
-                domain = gr.Radio(label="Anatomical Region",choices=anatomic_domains,value=default_region)
-                input_study = gr.TextArea(label="Or paste a clinical study report content",placeholder="Paste content here...",lines=5)
-                with gr.Row():
-                    btn_reset = gr.Button(value="Reset",variant="stop")
-                    btn_add_study = gr.Button(value="Add",variant="primary")
-
-        gr.HTML("<hr>")
-        with gr.Row():
-            gr.Markdown("## Literature Report")
-
-        gr.HTML("<hr>")
-        with gr.Row(equal_height=False):
-            with gr.Column():
-                dropdown = gr.Dropdown(label="Select a literature report",choices=app_data["articles"].keys())
-            with gr.Column():
-                with gr.Row():
-                    btn_get_article = gr.Button(value="Get",variant="primary")
-                    btn_refresh = gr.Button(value="Refresh",variant="primary")
-
-        gr.HTML("<hr>")
-        # extraction outcome panel
-        with gr.Row(equal_height=False):
-            with gr.Column():
-                overview = gr.Markdown("")
-            with gr.Column():
-                # tables = gr.Markdown("")
-                detail_views = gr.Markdown("")
-                
-        # control element definition
-        btn_get_article.click(
-            get_existing_article,
-            inputs=[
-                dropdown,
-            ],
-            outputs=[
-                overview,
-                detail_views,
-            ]
-        )
-
-        btn_reset.click(
-            reset,
-            outputs=[
-                domain,
-                upload_study,
-                input_study,
-                overview,
-                detail_views,
-            ]
-        )
-
-        btn_add_study.click(
-            process_study,
-            inputs=[
-                domain,
-                upload_study,
-                input_study,
-            ],
-            outputs=[
-                overview,
-                detail_views,
-                # tables
-            ],
-        )
-
-        btn_refresh.click(
-            refresh,
-            outputs=[
-                overview,
-                detail_views,
-            ],
-        )
-    return study_page

ui_summary.py

@@ -0,0 +1,62 @@
+import gradio as gr
+
+from utility import *
+from application import *
+from features import init_app_data # , add_device, remove_device, get_device
+
+def reset():
+    return (
+        gr.Textbox.update(value=""),
+        gr.Textbox.update(value=""),
+        gr.TextArea.update(value=""),
+        gr.TextArea.update(value=""),
+        gr.TextArea.update(value=""),
+        gr.Markdown.update(value="")
+    )
+
+def refresh():
+    init_app_data()
+    '''
+    refresh the literature report.
+    '''
+    return create_md_tables(app_data["devices"]), gr.Dropdown.update(choices=[d["device_name"] for d in app_data["devices"]])
+
+with gr.Blocks() as summary_page:
+    with gr.Row():
+        with gr.Column():
+            gr.Markdown("## Summary")
+            gr.HTML("<hr>")
+            select_device = gr.Dropdown(
+                choices=[d["device_name"] for d in app_data["devices"]],
+                value=None,
+                label="Select Device",
+                interactive=True
+            )
+            gr.HTML("<hr>")
+
+        # btn_reset.click(
+        #     fn=reset,
+        #     outputs=[
+        #         device_name,
+        #         device_type,
+        #         intended_use,
+        #         indications,
+        #         contraindications,
+        #         details
+        #     ])
+
+        # show the list of devices in the database
+        with gr.Column(scale=2):
+            gr.Markdown("## Summary")
+            btn_refresh = gr.Button(value="Refresh",variant="primary")
+            gr.HTML("<hr>")
+        
+            device_list = gr.Markdown("")
+        
+        btn_refresh.click(
+            fn=refresh,
+            outputs=[
+                device_list,
+                select_device
+                ]
+        )