Commit
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7d5b555
1
Parent(s):
c4fa085
Added segmentation plots after evaluation
Browse files
Brain_study/Evaluate_network.py
CHANGED
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@@ -179,6 +179,7 @@ if __name__ == '__main__':
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plt.close()
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plot_predictions(fix_img, mov_img, disp_map, pred_img, os.path.join(output_folder, '{:03d}_figures.png'.format(step)), show=False)
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save_disp_map_img(disp_map, 'Displacement map', os.path.join(output_folder, '{:03d}_disp_map_fig.png'.format(step)), show=False)
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progress_bar.set_description('SSIM {:.04f}\tDICE: {:.04f}'.format(ssim, dice))
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plt.close()
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plot_predictions(fix_img, mov_img, disp_map, pred_img, os.path.join(output_folder, '{:03d}_figures.png'.format(step)), show=False)
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plot_predictions(fix_seg, mov_seg, disp_map, pred_seg, os.path.join(output_folder, '{:03d}_figures_seg.png'.format(step)), show=False)
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save_disp_map_img(disp_map, 'Displacement map', os.path.join(output_folder, '{:03d}_disp_map_fig.png'.format(step)), show=False)
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progress_bar.set_description('SSIM {:.04f}\tDICE: {:.04f}'.format(ssim, dice))
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Brain_study/Evaluate_network__test_fixed.py
CHANGED
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@@ -236,6 +236,7 @@ if __name__ == '__main__':
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# plt.close()
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plot_predictions(fix_img, mov_img, disp_map, pred_img, os.path.join(output_folder, '{:03d}_figures.png'.format(step)), show=False)
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save_disp_map_img(disp_map, 'Displacement map', os.path.join(output_folder, '{:03d}_disp_map_fig.png'.format(step)), show=False)
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progress_bar.set_description('SSIM {:.04f}\tDICE: {:.04f}'.format(ssim, dice))
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# plt.close()
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plot_predictions(fix_img, mov_img, disp_map, pred_img, os.path.join(output_folder, '{:03d}_figures.png'.format(step)), show=False)
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+
plot_predictions(fix_seg, mov_seg, disp_map, pred_seg, os.path.join(output_folder, '{:03d}_figures_seg.png'.format(step)), show=False)
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save_disp_map_img(disp_map, 'Displacement map', os.path.join(output_folder, '{:03d}_disp_map_fig.png'.format(step)), show=False)
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progress_bar.set_description('SSIM {:.04f}\tDICE: {:.04f}'.format(ssim, dice))
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