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Anirudh Balaraman commited on
Update getting-started.md
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docs/getting-started.md
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## Data Format
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Input
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The data pipeline uses MONAI's decathlon-format JSON:
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```json
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{
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"test": [...]
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}
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```
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Paths are relative to `data_root`. PI-RADS labels are 0-indexed (`0` = PI-RADS 2, `3` = PI-RADS 5). csPCa labels are binary (0 or 1).
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## Data Format
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Input bpMRI scans should have all three sequnces, T2W, ADC and DWI as separate files in **NRRD** format. The prostate mask and heatmap are generated by the sample for each sample. To train the models or run testing with reference labels, the data pipeline uses MONAI's decathlon-format JSON:
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```json
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{
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"test": [...]
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}
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```
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Sample JSON files are available in the github repository.
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Paths are relative to `data_root`. PI-RADS labels are 0-indexed (`0` = PI-RADS 2, `3` = PI-RADS 5). csPCa labels are binary (0 or 1).
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