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Anirudh Balaraman commited on
Update README with improved abstract and fixes
Browse filesRevised abstract for clarity and corrected typos in key features.
README.md
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## ⭐ Abstract
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Deep learning methods used in medical AI—particularly for csPCa prediction and PI-RADS classification—typically rely on expert-annotated labels for training, which limits scalability to larger datasets and broader clinical adoption. To address this, we employ a two-stage multiple-instance learning (MIL) framework pretrained on scan-level PI-RADS annotations
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## Key Features
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- **Attention Heatmaps** - Weak attention heatmaps
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- **Weakly-Supervised Attention** — Heatmap-guided patch sampling and cosine-similarity attention loss replace the need for voxel-level labels.
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- **3D Multiple Instance Learning** — Extracts volumetric patches from bpMRI scans and aggregates them via transformer + attention pooling
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- **Two-stage pipeline** —
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- **End-to-end
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## Pipeline Overview
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## ⭐ Abstract
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Deep learning methods used in medical AI—particularly for csPCa prediction and PI-RADS classification—typically rely on expert-annotated labels for training, which limits scalability to larger datasets and broader clinical adoption. To address this, we employ a two-stage multiple-instance learning (MIL) framework pretrained on scan-level PI-RADS annotations with attention-based weak supervision, guided by weak attention heatmaps automatically derived from ADC and DWI sequences. For downstream risk assessment, the PI-RADS classification head is replaced and fine-tuned on a substantially smaller dataset to predict csPCa risk. Careful preprocessing is applied to mitigate variability arising from cross-site MRI acquisition differences. For further details, please refer to our paper or visit the project website.
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## Key Features
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- ⚡**Automatic Attention Heatmaps** - Weak attention heatmaps generated automatically from DWI and ADC sequnces.
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- 🧠**Weakly-Supervised Attention** — Heatmap-guided patch sampling and cosine-similarity attention loss, replace the need for voxel-level labels.
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- 🧩**3D Multiple Instance Learning** — Extracts volumetric patches from bpMRI scans and aggregates them via transformer + attention pooling.
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- 👁️**Two-stage pipeline** — Visualise salient patches highlighting probable tumour regions.
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- 🧹**Preprocessing** — Preprocessing to minimize inter-center MRI acquisiton variability.
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- 🏥**End-to-end Pipeline** — Open source, clinically viable complete pipeline.
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## Pipeline Overview
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