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History: 39 commits

Annie Voigt

docs: Loveless prod e2e verified (both sc UMAPs) + Werba pseudobulk→DESeq2 clean; ADR-0006 items 7/8 closed

4438f8f 12 days ago

ADR-0001-cross-dataset-integration.md

25.6 kB
feat(integration): ComBat per-sample scoring tool decoupler_pool_cohorts (ADR-0001 item 10) 2 months ago
ADR-0001-decision-matrix.md

2.46 kB
docs(adr): reduce ADR-0001 decision-matrix to a pointer (moved to biodata-registry) 2 months ago
ADR-0001-implementation-plan.md

12.8 kB
ADR-0001 Phase 2 Mode A: early integration (T7 + T8 + T9) 2 months ago
ADR-0001-spinoff-tasks.md

31.8 kB
docs(adr): accept ADR-0003/0004/0005; reconcile ADR-0001 checkboxes + concordance 2 months ago
ADR-0002-result-aware-sanity-layer.md

7.23 kB
docs(adr): accept ADR-0003/0004/0005; reconcile ADR-0001 checkboxes + concordance 2 months ago
ADR-0002-spinoff-tasks.md

14.4 kB
docs(adr): reconcile stale status headers + add ADR-0003/0004/0005 2 months ago
ADR-0003-spaces-dev-mode.md

7.51 kB
docs(adr): close ADR-0003/0005 housekeeping; add security-review ADRs 0008-0011 about 2 months ago
ADR-0004-zerogpu-spaces.md

5.98 kB
docs(adr): accept ADR-0003/0004/0005; reconcile ADR-0001 checkboxes + concordance 2 months ago
ADR-0005-private-storage-persistence.md

7.06 kB
docs(adr): close ADR-0003/0005 housekeeping; add security-review ADRs 0008-0011 about 2 months ago
ADR-0006-loveless-single-cell-serving.md

14 kB
docs: Loveless prod e2e verified (both sc UMAPs) + Werba pseudobulk→DESeq2 clean; ADR-0006 items 7/8 closed 12 days ago
ADR-0007-phase1-local-validation.md

9.04 kB
chore(scripts): rename the limma probe so pytest stops collecting it 19 days ago
ADR-0007-phase2-local-hardening.md

7.27 kB
feat(exec): ADR-0007 Phase 2 local hardening for ContainerLauncher about 2 months ago
ADR-0007-sandboxed-code-execution.md

8.98 kB
docs(adr): ADR-0007 Proposed -> Accepted/in-progress (Phases 0-2 done, 3-4 AWS-blocked) about 2 months ago
ADR-0008-always-on-audit-logging.md

4.4 kB
Merge feat/configurable-log-sink: always-on audit log sink (ADR-0008 + ADR-0009) about 2 months ago
ADR-0009-s3-log-sink.md

8.65 kB
docs(adr-0009): add Appendix A — OHSU bucket & IAM spec (Phase 2 handoff) about 2 months ago
ADR-0010-dataset-integrity-verification.md

6.38 kB
feat(integrity): ADR-0010 on-load verify for GEO series-matrix loads about 2 months ago
ADR-0011-upload-safety-gate.md

12.5 kB
fix(uploads): scan before parse; drop ungated URL/HF originals (ADR-0011) 26 days ago
ADR-0012-authentication-access-control.md

9.74 kB
docs(adr): close out ADR-0012 — deployed to prod + validated end-to-end about 2 months ago
ADR-0013-audit-trace-redaction.md

7.14 kB
feat(logging): ADR-0013 audit-trace redaction (secret/credential/PII scrubbing) about 2 months ago
ADR-0014-ci-security-scanning.md

8.46 kB
feat(security): ADR-0014 CI security scanning + shared scan definition about 2 months ago