query-entity-export / Dockerfile
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FROM python:3.11-slim-bookworm
ENV PYTHONUNBUFFERED=1 \
DEBIAN_FRONTEND=noninteractive \
ICD_QUICKUMLS_DATA_DIR=/app/quickumls_data \
ICD_MRCONSO_CLINICAL_PARQUET=/app/data/processed/graph/mrconso_clinical.parquet
RUN apt-get update && apt-get install -y --no-install-recommends \
build-essential \
python3-dev \
unzip \
curl \
&& curl -fsSL "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o /tmp/awscliv2.zip \
&& unzip -q /tmp/awscliv2.zip -d /tmp \
&& /tmp/aws/install \
&& rm -rf /tmp/aws /tmp/awscliv2.zip \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
WORKDIR /app
COPY requirements-quickumls.txt requirements-space.txt ./
RUN pip install --no-cache-dir -r requirements-quickumls.txt \
&& pip install --no-cache-dir -r requirements-space.txt
COPY config/ config/
COPY src/ src/
COPY scripts/ scripts/
COPY data/ data/
COPY app.py space_service.py space_entrypoint.sh ./
RUN chmod +x space_entrypoint.sh
EXPOSE 7860
CMD ["./space_entrypoint.sh"]