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Visualize the knowledge graph from knowledge_map.json
Creates an interactive, beautiful HTML visualization with tree layout.
Handles multiple disconnected graphs by stacking them vertically.
Groups web sources under a proxy node to reduce clutter.
Usage:
python visualize_graph.py [optional_json_file]
"""
import json
import os
import sys
import glob
import shutil
from typing import List, Dict, Set
def load_graph(filepath: str) -> dict:
"""Load the knowledge graph JSON."""
with open(filepath, 'r') as f:
return json.load(f)
def get_connected_subgraphs(graph_data: dict) -> List[dict]:
"""Split the graph into connected components (subgraphs)."""
nodes_map = {n['id']: n for n in graph_data['nodes']}
# Build undirected adjacency for connectivity check
adjacency: Dict[str, Set[str]] = {n_id: set() for n_id in nodes_map}
for edge in graph_data['edges']:
src, tgt = edge['source'], edge['target']
if src in nodes_map and tgt in nodes_map:
adjacency[src].add(tgt)
adjacency[tgt].add(src)
visited = set()
subgraphs = []
# Sort keys for deterministic order
node_ids = sorted(list(nodes_map.keys()))
for start_node in node_ids:
if start_node in visited:
continue
# BFS to find component
component_ids = set()
queue = [start_node]
visited.add(start_node)
component_ids.add(start_node)
while queue:
curr = queue.pop(0)
for neighbor in adjacency.get(curr, []):
if neighbor not in visited:
visited.add(neighbor)
component_ids.add(neighbor)
queue.append(neighbor)
# Collect nodes and edges for this component
sub_nodes = [nodes_map[nid] for nid in component_ids]
sub_edges = [
e for e in graph_data['edges']
if e['source'] in component_ids and e['target'] in component_ids
]
subgraphs.append({"nodes": sub_nodes, "edges": sub_edges})
# Sort subgraphs by size (node count) descending
subgraphs.sort(key=lambda g: len(g['nodes']), reverse=True)
return subgraphs
def compress_subgraph_sources(subgraph: dict) -> dict:
"""
Groups all 'source' nodes in the subgraph under a single 'Web Resources' proxy node.
- Original edges satisfying (Any -> Source) become (Any -> Proxy)
- New edges added (Proxy -> Source)
"""
new_nodes = []
source_nodes = []
# Separate source nodes from others
for node in subgraph['nodes']:
if node.get('type') == 'source':
source_nodes.append(node)
else:
new_nodes.append(node)
# If fewer than 2 sources, simplify: don't compress (or do we always want to?)
# User said "clumb all the webs together". Even 1 source could benefit from being under a "Resources" folder if we want consistency,
# but strictly speaking 1 source doesn't need clustering.
# Let's stick to >= 2 to avoid creating a folder for a single item unless requested.
if len(source_nodes) < 2:
return subgraph
# Create Proxy Node
# Unique per subgraph visualization since they are isolated files
proxy_id = "proxy_web_resources"
proxy_node = {
"id": proxy_id,
"type": "proxy",
"content": "Web Resources",
"description": "Grouped collection of all web sources linked in this graph."
}
new_nodes.append(proxy_node)
# Keep sources in the list so they are still visible when expanding connected to proxy
new_nodes.extend(source_nodes)
new_edges = []
source_ids = {n['id'] for n in source_nodes}
# Process existing edges
# Connect Keywords/etc -> Proxy instead of -> Source
seen_proxy_edge_sources = set()
for edge in subgraph['edges']:
if edge['target'] in source_ids:
# Reroute to proxy
# Avoid duplicate edges from same source to proxy
if edge['source'] not in seen_proxy_edge_sources:
new_edges.append({
"source": edge['source'],
"target": proxy_id,
"relation": "references_resources"
})
seen_proxy_edge_sources.add(edge['source'])
# We DROP the direct link to the specific source from the keyword
else:
# Keep other edges as is
new_edges.append(edge)
# Add connections from Proxy -> Sources
for src_node in source_nodes:
new_edges.append({
"source": proxy_id,
"target": src_node['id'],
"relation": "contains"
})
return {"nodes": new_nodes, "edges": new_edges}
def create_pyvis_network(graph_data: dict, output_path: str):
"""Create a PyVis HTML for a single subgraph."""
try:
from pyvis.network import Network
except ImportError:
print("Installing pyvis...")
os.system("pip install pyvis -q")
from pyvis.network import Network
# Determine height based on node count
net_height = "600px"
net = Network(height=net_height, width="100%",
bgcolor="#0b0c10", font_color="#c5c6c7", directed=True)
# Configuration for FontAwesome icons
type_config = {
"answer": {"color": "#66fcf1", "icon": "f0eb", "size": 50, "label_color": "#ffffff"},
"keyword": {"color": "#f1c40f", "icon": "f02b", "size": 35, "label_color": "#f1c40f"},
"source": {"color": "#1f2833", "icon": "f0c1", "size": 30, "label_color": "#888888"},
"document": {"color": "#2c3e50", "icon": "f15b", "size": 25, "label_color": "#888888"},
"topic": {"color": "#c5c6c7", "icon": "f0c2", "size": 30, "label_color": "#c5c6c7"},
"question": {"color": "#45a29e", "icon": "f059", "size": 40, "label_color": "#c5c6c7"},
# Folder icon
"proxy": {"color": "#e74c3c", "icon": "f07b", "size": 45, "label_color": "#ffffff"}
}
seen_ids = set()
for node in graph_data["nodes"]:
n_id = node["id"]
if n_id in seen_ids:
continue
seen_ids.add(n_id)
n_type = node.get("type", "topic")
config = type_config.get(n_type, type_config["topic"])
content = node.get("content", node.get("url", ""))
import textwrap
wrapped_content = "\\n".join(textwrap.wrap(content, width=50))
tooltip_text = f"[{n_type.upper()}]\\n{'-'*20}\\n{wrapped_content}"
label_text = content
if len(label_text) > 25:
label_text = label_text[:22] + "..."
net.add_node(
n_id,
label=label_text,
title=tooltip_text,
shape='icon',
icon={
'face': "'FontAwesome'",
'code': chr(int(config['icon'], 16)),
'size': config['size'],
'color': config['color']
},
font={'color': config['label_color'], 'face': 'arial',
'size': 16, 'strokeWidth': 2, 'strokeColor': "#000000"}
)
for edge in graph_data["edges"]:
relation = edge.get("relation", "related")
color = "#2b3543"
width = 1
dashes = False
font_color = "#888888"
if relation in ["required_for", "enables"]:
color = "#66fcf1"
width = 3
font_color = "#66fcf1"
elif relation in ["subset_of", "part_of"]:
color = "#45a29e"
width = 2
dashes = True
font_color = "#45a29e"
elif relation == "source_for":
color = "#2c3e50"
width = 1
elif relation == "references_resources":
color = "#e74c3c"
width = 2
font_color = "#e74c3c"
elif relation == "contains":
color = "#555555"
width = 1
dashes = True
net.add_edge(
edge["source"], edge["target"],
label=relation, title=relation, color=color, width=width,
arrows={'to': {'enabled': True, 'scaleFactor': 0.5}},
dashes=dashes,
font={'color': font_color, 'size': 12, 'align': 'middle',
'background': '#0b0c10', 'strokeWidth': 0},
smooth={'type': 'cubicBezier', 'roundness': 0.5}
)
options = {
"nodes": {"font": {"strokeWidth": 2, "strokeColor": "#0b0c10"}},
"edges": {"color": {"inherit": False}, "smooth": {"enabled": True, "type": "cubicBezier", "forceDirection": "vertical", "roundness": 0.5}},
"layout": {
"hierarchical": {
"enabled": True, "direction": "UD", "sortMethod": "directed",
"nodeSpacing": 200, "levelSeparation": 150, "treeSpacing": 220,
"blockShifting": True, "edgeMinimization": True, "parentCentralization": True
}
},
"physics": {
"hierarchicalRepulsion": {"centralGravity": 0.0, "springLength": 100, "springConstant": 0.01, "nodeDistance": 220, "damping": 0.09},
"solver": "hierarchicalRepulsion",
"stabilization": {"enabled": True, "iterations": 1000}
}
}
net.set_options(json.dumps(options))
net.save_graph(output_path)
# Inject Custom CSS and FontAwesome
with open(output_path, 'r') as f:
html_content = f.read()
fa_link = '<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/all.min.css">'
if "font-awesome" not in html_content:
html_content = html_content.replace(
'<head>', f'<head>\\n {fa_link}')
custom_css = """
<style>
body { background-color: #0b0c10 !important; margin: 0; padding: 0; overflow: hidden; }
div.vis-tooltip {
background-color: #1f2833 !important;
border: 1px solid #66fcf1 !important;
color: #c5c6c7 !important;
font-family: monospace !important;
font-size: 14px !important;
border-radius: 4px !important;
padding: 10px !important;
box-shadow: 0 0 10px rgba(102, 252, 241, 0.2) !important;
white-space: pre-wrap !important;
max-width: 400px !important;
z-index: 10000;
}
.vis-configuration-wrapper { display: none; }
</style>
"""
html_content = html_content.replace('</head>', f'{custom_css}\\n</head>')
with open(output_path, 'w') as f:
f.write(html_content)
def create_master_visualization(subgraphs: List[dict], output_base_name: str, output_dir: str):
"""Create a master HTML file stacking iframes of subgraphs."""
parts_dir = os.path.join(output_dir, "parts")
if os.path.exists(parts_dir):
shutil.rmtree(parts_dir)
os.makedirs(parts_dir)
part_files = []
print(f"Generating visualizations for {len(subgraphs)} subgraphs...")
for i, subgraph in enumerate(subgraphs):
# Apply proxy compression here
compressed_subgraph = compress_subgraph_sources(subgraph)
part_filename = f"{output_base_name}_part_{i+1}.html"
part_path = os.path.join(parts_dir, part_filename)
create_pyvis_network(compressed_subgraph, part_path)
part_files.append(f"parts/{part_filename}")
print(
f" - Generated subgraph {i+1} ({len(compressed_subgraph['nodes'])} nodes)")
# Create Master HTML
master_path = os.path.join(output_dir, f"{output_base_name}.html")
iframe_blocks = ""
for part_ref in part_files:
iframe_blocks += f"""
<div class="graph-container">
<iframe src="{part_ref}" scrolling="no"></iframe>
</div>
"""
master_html = f"""<!DOCTYPE html>
<html>
<head>
<title>Knowledge Graph Visualization</title>
<style>
body {{
background-color: #0b0c10;
color: #c5c6c7;
font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;
margin: 0;
padding: 20px;
}}
h1 {{
text-align: center;
color: #66fcf1;
margin-bottom: 30px;
}}
.graph-container {{
width: 100%;
height: 650px;
margin-bottom: 40px;
border: 1px solid #1f2833;
border-radius: 8px;
overflow: hidden;
background-color: #0b0c10;
box-shadow: 0 4px 15px rgba(0,0,0,0.5);
}}
iframe {{
width: 100%;
height: 100%;
border: none;
}}
</style>
</head>
<body>
<h1>Knowledge Graphs ({len(subgraphs)} Sessions)</h1>
{iframe_blocks}
</body>
</html>
"""
with open(master_path, 'w') as f:
f.write(master_html)
return master_path
import html
import tempfile
def generate_stacked_graph_html(graph_data: dict) -> str:
"""Generate a single HTML string containing stacked PyVis graphs."""
if not graph_data or not graph_data.get("nodes"):
return "<html><body style='background-color:#0A0C10;'><h3 style='color:#c5c6c7;text-align:center;margin-top:50px;font-family:sans-serif;'>No graph data available.</h3></body></html>"
subgraphs = get_connected_subgraphs(graph_data)
iframe_blocks = ""
for i, subgraph in enumerate(subgraphs):
compressed = compress_subgraph_sources(subgraph)
with tempfile.NamedTemporaryFile(suffix=".html", delete=False) as tmp:
tmp_path = tmp.name
create_pyvis_network(compressed, tmp_path)
with open(tmp_path, 'r') as f:
part_html = f.read()
os.remove(tmp_path)
# Escape the HTML for srcdoc
escaped_html = html.escape(part_html)
iframe_blocks += f"""
<div class="graph-container">
<iframe srcdoc="{escaped_html}" scrolling="no"></iframe>
</div>
"""
master_html = f"""<!DOCTYPE html>
<html>
<head>
<style>
body {{
background-color: #0A0C10;
color: #c5c6c7;
font-family: 'DM Sans', sans-serif;
margin: 0;
padding: 20px;
}}
h1 {{
text-align: center;
color: #705CFF;
margin-bottom: 30px;
font-size: 1.5rem;
letter-spacing: 0.05em;
}}
.graph-container {{
width: 100%;
height: 650px;
margin-bottom: 40px;
border: 1px solid rgba(255, 255, 255, 0.05);
border-radius: 12px;
overflow: hidden;
background-color: #0b0c10;
box-shadow: 0 8px 32px rgba(0,0,0,0.4);
}}
iframe {{
width: 100%;
height: 100%;
border: none;
}}
</style>
</head>
<body>
<h1>Knowledge Graph Map ({len(subgraphs)} Stages)</h1>
{iframe_blocks}
</body>
</html>
"""
return master_html
def main():
if len(sys.argv) > 1:
filepath = sys.argv[1]
else:
files = glob.glob("log/knowledge_map_*.json")
if files:
files.sort(key=lambda f: int(
f.replace("log/knowledge_map_", "").replace(".json", "")))
filepath = files[-1]
else:
filepath = "log/knowledge_map.json"
if not os.path.exists(filepath):
print(f"Error: {filepath} not found.")
sys.exit(1)
print(f"Processing: {filepath}")
graph_data = load_graph(filepath)
if len(graph_data.get("nodes", [])) == 0:
print("Graph is empty.")
return
subgraphs = get_connected_subgraphs(graph_data)
output_dir = os.path.dirname(filepath)
output_base = "knowledge_graph_" + \
os.path.basename(filepath).replace(".json", "")
master_path = create_master_visualization(
subgraphs, output_base, output_dir)
print(f"Visualization saved to: {master_path}")
import webbrowser
webbrowser.open(f"file://{os.path.abspath(master_path)}")
if __name__ == "__main__":
main()
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