export_manifest.json

{
  "export_root": "/content/THP_NanoTarget_HF_Space",
  "asset_root": "/content/THP_NanoTarget_HF_Space/tumor_homing_peptide_ai",
  "app_source": "/content/app_final_v2_with_interactive_ppin_GENE_NAMES_FIXED_REORDERED.py",
  "n_copied_items": 47,
  "copied_items": [
    "models_ensemble_final_v2/tfidf_logistic_2_4_final_full_primary_final_v2.pkl",
    "models_ensemble_final_v2/count_logistic_2_4_final_full_primary_final_v2.pkl",
    "models_ensemble_final_v2/tfidf_logistic_3_5_final_full_primary_final_v2.pkl",
    "models_ensemble_final_v2/tfidf_svm_2_4_final_full_primary_final_v2.pkl",
    "tables_recommendation_final_v2/peptide_receptor_cancer_recommendation_matrix_ensemble_final_v2.csv",
    "tables_recommendation_final_v2/peptide_ligand_suitability_scores_with_ensemble_final_v2.csv",
    "tables_targetability_final_v2/receptor_cancer_targetability_scores_final_v2.csv",
    "tables_ensemble_final_v2/ensemble_oof_performance_final_v2.csv",
    "tables_ensemble_final_v2/ensemble_cancerppd_challenge_summary_final_v2.csv",
    "data_processed/final_receptor_prioritization_table_FINAL_HPA_STRING.csv",
    "data_processed/final_receptor_prioritization_table_top_candidates_FINAL_HPA_STRING.csv",
    "data_processed/string_receptor_physical_ppi_summary.csv",
    "data_processed/string_receptor_physical_ppi_edges.csv",
    "cheminformatics_extension_final_v2/tables/cheminformatics_rdkit_descriptors_final_v2.csv",
    "cheminformatics_extension_final_v2/tables/cheminformatics_descriptors_with_model_scores_final_v2.csv",
    "cheminformatics_extension_final_v2/tables/chemical_space_embedding_final_v2.csv",
    "cheminformatics_extension_final_v2/tables/motif_rule_baseline_vs_ml_models_final_v2.csv",
    "cheminformatics_extension_final_v2/similarity_search/similarity_index_metadata_final_v2.csv",
    "cheminformatics_extension_final_v2/similarity_search/similarity_index_morgan_ecfp_final_v2.npy",
    "tables_recommendation_final_v2/peptide_receptor_cancer_recommendation_matrix_oof_final_v2.csv",
    "tables_recommendation_final_v2/peptide_ligand_suitability_scores_with_oof_final_v2.csv",
    "tables_oof_final_v2/cluster_oof_performance_kmer_final_v2.csv",
    "tables_oof_final_v2/cancerppd_final_kmer_challenge_metrics_final_v2.csv",
    "cheminformatics_extension_final_v2/fingerprints/morgan_ecfp_radius2_2048_final_v2.npy",
    "cheminformatics_extension_final_v2/fingerprints/morgan_ecfp_radius2_2048_metadata_final_v2.csv",
    "generated_candidate_analogs_final_v2/tables/generated_candidate_analogs_ranked_final_v2.csv",
    "generated_candidate_analogs_final_v2/tables/top_100_generated_candidate_analogs_final_v2.csv",
    "generated_candidate_analogs_final_v2/tables/generated_candidate_similarity_audit_final_v2.csv",
    "generated_candidate_analogs_final_v2/tables/generated_candidate_generation_summary_final_v2.csv",
    "validation_suite_final_v2/tables/analog_generation_validation_scored_fixed_final_v2.csv",
    "validation_suite_final_v2/tables/analog_generation_validation_summary_fixed_final_v2.csv",
    "validation_suite_final_v2/tables/analog_generation_novelty_bucket_summary_fixed_final_v2.csv",
    "manifests/final_hpa_string_receptor_prioritization_status.json",
    "manifests/string_ppi_receptor_network_status.json",
    "manifests/oof_kmer_status_final_v2.json",
    "manifests/ensemble_status_final_v2.json",
    "manifests/cheminformatics_extension_status_final_v2.json",
    "manifests/generated_candidate_analogs_status_final_v2.json",
    "manifests/validation_suite_status_final_v2.json",
    "manifests/strict_external_validation_status_final_v2.json",
    "manifests/analog_generation_validation_fixed_status_final_v2.json",
    "tables_validation_level1_final_v2",
    "tables_validation_level2_strict_final_v2",
    "tables_validation_family_holdout_final_v2",
    "tables_validation_level3_final_v2",
    "validation_suite_final_v2/tables",
    "external_validation_strict_final_v2/tables"
  ],
  "missing_required": [],
  "missing_optional": [
    "/content/tumor_homing_peptide_ai/models_ensemble_final_v2/tfidf_logistic_2_4_final.pkl",
    "/content/tumor_homing_peptide_ai/models_ensemble_final_v2/count_logistic_2_4_final.pkl",
    "/content/tumor_homing_peptide_ai/models_ensemble_final_v2/tfidf_logistic_3_5_final.pkl",
    "/content/tumor_homing_peptide_ai/models_ensemble_final_v2/tfidf_svm_2_4_final.pkl",
    "/content/tumor_homing_peptide_ai/models_final_v2/OOF_TFIDF_kmer_LogisticRegression_final_full_primary.pkl",
    "/content/tumor_homing_peptide_ai/models_final_v2/OOF_TFIDF_kmer_LinearSVM_calibrated_final_full_primary.pkl"
  ]
}