AnemiaLens / backend /app /database.py
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"""
Async SQLAlchemy engine and session factory for AnemiaLens.
Supports SQLite (dev) and PostgreSQL (production) via DATABASE_URL.
Performance optimizations:
- Connection pooling with configurable pool size
- pool_pre_ping for stale connection detection
- pool_recycle for automatic connection refresh
- Query result caching for frequently-accessed data
- Indexed columns for common query patterns
"""
from __future__ import annotations
import logging
import os
from contextlib import asynccontextmanager
from pathlib import Path
from dotenv import load_dotenv
from sqlalchemy import event
from sqlalchemy.ext.asyncio import AsyncSession, async_sessionmaker, create_async_engine
from sqlalchemy.orm import DeclarativeBase
from sqlalchemy.pool import AsyncAdaptedQueuePool
BACKEND_ROOT = Path(__file__).resolve().parents[1]
load_dotenv(BACKEND_ROOT / ".env")
log = logging.getLogger("anemialens.db")
DEFAULT_SQLITE_DATABASE_URL = "sqlite+aiosqlite:///./anemialens.db"
# ---------------------------------------------------------------------------
# Connection pooling configuration
# ---------------------------------------------------------------------------
POOL_SIZE = int(os.getenv("DB_POOL_SIZE", "10"))
MAX_OVERFLOW = int(os.getenv("DB_MAX_OVERFLOW", "20"))
POOL_RECYCLE = int(os.getenv("DB_POOL_RECYCLE", "1800"))
POOL_TIMEOUT = int(os.getenv("DB_POOL_TIMEOUT", "30"))
POOL_PRE_PING = os.getenv("DB_POOL_PRE_PING", "true").lower() == "true"
SLOW_QUERY_THRESHOLD_MS = int(os.getenv("SLOW_QUERY_THRESHOLD_MS", "0"))
def _normalize_database_url(database_url: str) -> str:
url = database_url.strip()
if url.startswith("postgres://"):
return url.replace("postgres://", "postgresql+asyncpg://", 1)
if url.startswith("postgresql://") and "+asyncpg" not in url:
return url.replace("postgresql://", "postgresql+asyncpg://", 1)
return url
def _resolve_database_url() -> str:
return _normalize_database_url(
os.getenv("DATABASE_URL", DEFAULT_SQLITE_DATABASE_URL)
)
def _runtime_environment() -> str:
return (
os.getenv("ANEMIALENS_ENVIRONMENT")
or os.getenv("ENVIRONMENT")
or "development"
).strip().lower()
def _truthy_env(value: str | None) -> bool | None:
if value is None:
return None
return value.strip().lower() in {"1", "true", "yes", "on"}
def _development_database_fallback_enabled() -> bool:
explicit = _truthy_env(os.getenv("ANEMIALENS_ENABLE_DEV_DB_FALLBACK"))
if explicit is not None:
return explicit
return _runtime_environment() != "production"
def _development_fallback_database_url() -> str:
return _normalize_database_url(
os.getenv("ANEMIALENS_DEV_DATABASE_URL", DEFAULT_SQLITE_DATABASE_URL)
)
def _build_connect_args(database_url: str) -> dict[str, object]:
connect_args: dict[str, object] = {}
if "sqlite" in database_url:
connect_args["check_same_thread"] = False
elif "postgres" in database_url:
connect_args["ssl"] = "require"
return connect_args
def _build_engine_kwargs(database_url: str) -> dict[str, object]:
"""Build engine configuration based on database type."""
connect_args = _build_connect_args(database_url)
base: dict[str, object] = {
"echo": False,
"pool_pre_ping": POOL_PRE_PING,
"connect_args": connect_args,
}
if "sqlite" in database_url:
base["connect_args"] = {**connect_args, "timeout": 30}
base["pool_size"] = 1
base["max_overflow"] = 0
elif "postgres" in database_url:
base["pool_size"] = POOL_SIZE
base["max_overflow"] = MAX_OVERFLOW
base["pool_recycle"] = POOL_RECYCLE
base["pool_timeout"] = POOL_TIMEOUT
base["poolclass"] = AsyncAdaptedQueuePool
return base
def _attach_slow_query_logging(target_engine) -> None:
if SLOW_QUERY_THRESHOLD_MS <= 0:
return
@event.listens_for(target_engine.sync_engine, "before_cursor_execute")
def _before_cursor_execute(conn, cursor, statement, parameters, context, executemany):
conn.info.setdefault("query_start_time", []).append(__import__("time").time())
@event.listens_for(target_engine.sync_engine, "after_cursor_execute")
def _after_cursor_execute(conn, cursor, statement, parameters, context, executemany):
start_times = conn.info.get("query_start_time", [])
if start_times:
start = start_times.pop()
elapsed_ms = (__import__("time").time() - start) * 1000
if elapsed_ms > SLOW_QUERY_THRESHOLD_MS:
log.warning(
"SLOW QUERY (%.1fms): %s",
elapsed_ms,
statement[:200],
)
def _build_engine_and_session(database_url: str):
current_engine = create_async_engine(
database_url,
**_build_engine_kwargs(database_url),
)
_attach_slow_query_logging(current_engine)
session_factory = async_sessionmaker(
current_engine,
class_=AsyncSession,
expire_on_commit=False,
)
return current_engine, session_factory
DATABASE_URL = _resolve_database_url()
_configured_database_url = DATABASE_URL
engine, async_session_factory = _build_engine_and_session(DATABASE_URL)
async def _rebind_engine(database_url: str) -> None:
global DATABASE_URL, _configured_database_url, engine, async_session_factory
current_engine = engine
DATABASE_URL = database_url
_configured_database_url = database_url
engine, async_session_factory = _build_engine_and_session(database_url)
os.environ["DATABASE_URL"] = database_url
if current_engine is not engine:
await current_engine.dispose()
database_kind = "sqlite" if "sqlite" in database_url else "postgresql"
log.info("Database engine rebound for %s runtime.", database_kind)
def _ensure_engine_current() -> None:
current_database_url = _resolve_database_url()
if current_database_url == _configured_database_url:
return
globals()["DATABASE_URL"] = current_database_url
globals()["_configured_database_url"] = current_database_url
globals()["engine"], globals()["async_session_factory"] = _build_engine_and_session(
current_database_url
)
database_kind = "sqlite" if "sqlite" in current_database_url else "postgresql"
log.info("Database engine rebound for %s runtime.", database_kind)
class Base(DeclarativeBase):
"""Declarative base for all ORM models."""
pass
@asynccontextmanager
async def get_db_session():
"""
Async context manager for database sessions.
Preferred over the dependency version for service-layer code.
"""
_ensure_engine_current()
async with async_session_factory() as session:
try:
yield session
await session.commit()
except Exception:
await session.rollback()
raise
finally:
await session.close()
async def get_db():
"""FastAPI dependency that yields an async database session."""
_ensure_engine_current()
async with async_session_factory() as session:
try:
yield session
await session.commit()
except Exception:
await session.rollback()
raise
finally:
await session.close()
async def create_tables() -> None:
"""Create all ORM tables - called once during app startup."""
_ensure_engine_current()
primary_database_url = DATABASE_URL
try:
await _create_all_tables_for_url(primary_database_url)
log.info("Database tables created/verified successfully.")
except Exception as exc:
log.error("Database table creation FAILED: %s", exc, exc_info=True)
fallback_url = await _activate_development_database_fallback(exc)
if fallback_url is not None:
await _create_all_tables_for_url(fallback_url)
log.info("Database tables created/verified successfully using SQLite fallback.")
return
log.warning("Continuing startup despite table creation error.")
async def close_engine() -> None:
"""Dispose of the engine - called during app shutdown."""
_ensure_engine_current()
await engine.dispose()
log.info("Database engine disposed.")
async def _create_all_tables_for_url(database_url: str) -> None:
ddl_url = database_url
if "pooler.supabase.com:6543" in ddl_url:
ddl_url = ddl_url.replace(":6543/", ":5432/")
log.info("Using session pooler (port 5432) for DDL operations.")
ddl_engine = create_async_engine(
ddl_url,
echo=False,
pool_pre_ping=True,
connect_args={"ssl": "require"} if "postgres" in ddl_url else {},
)
try:
async with ddl_engine.begin() as conn:
await conn.run_sync(Base.metadata.create_all)
finally:
await ddl_engine.dispose()
async def _activate_development_database_fallback(exc: Exception) -> str | None:
if "sqlite" in DATABASE_URL:
return None
if not _development_database_fallback_enabled():
return None
fallback_url = _development_fallback_database_url()
if fallback_url == DATABASE_URL:
return None
log.warning(
"Primary database unavailable in %s mode; falling back to local SQLite runtime. "
"Original error: %s",
_runtime_environment(),
exc,
)
await _rebind_engine(fallback_url)
return fallback_url
# ---------------------------------------------------------------------------
# Query optimization utilities
# ---------------------------------------------------------------------------
def paginated_query(query, page: int = 1, page_size: int = 20):
"""Apply pagination to a SQLAlchemy query."""
offset = (page - 1) * page_size
return query.offset(offset).limit(page_size)
async def cached_count(session: AsyncSession, model, cache_key: str | None = None, ttl: int = 60):
"""
Get cached row count for a model.
For large tables, count(*) is expensive; this caches the result.
"""
from app.services.cache import response_cache
from sqlalchemy import func, select
key = cache_key or f"count:{model.__tablename__}"
cached = await response_cache.get(key)
if cached is not None:
return cached
result = await session.execute(select(func.count()).select_from(model))
count = result.scalar() or 0
await response_cache.set(key, count, ttl_seconds=ttl)
return count