add requirements.txt

add tag

hf complicnt

Merge pull request #18 from mathysgrapotte/readme

delete embeding of video

Merge pull request #14 from mathysgrapotte/readme

add video

Merge pull request #17 from mathysgrapotte/update-meta-yml-with-confetis

fix bug for I/O display

Merge branch 'cute-gradio' into update-meta-yml-with-confetis

add outputs

add rotating nf-core apple and confetis upon completion

Merge pull request #15 from mathysgrapotte/cute-gradio

add progress bar

write readme

collapsable logs

center logs

adding smollagent logs to the output

remove emojis

in gradio app, we now output discovered edam ontologies and their links to an ontology browser

add nice looking interface

now works with a dictionary.

add type hints for serach ontology

change search_edam tool so that it returns strings instead of thing classes so that the model can directly pass those into other functions later

slightly change prompts to return lists of formats instead of single formats and added output support

Merge pull request #10 from mathysgrapotte/more-restructuring

add bio.tools to the main function and outline the structure with missing TODOs

Merge pull request #9 from caraiz2001/add-bio-tools-ontology

Update tools/meta_yml_tools.py

Merge pull request #8 from mathysgrapotte/restructuring

formatting

bug fixes

remove modal

Merge branch 'main' into add-bio-tools-ontology

modify main to include biotools

add id to ontology biotools

restructuring

Merge pull request #7 from mathysgrapotte/fetch-ontology-from-input

allow model to check its answers

override main.py changes

Merge branch 'main' into fetch-ontology-from-input

Merge pull request #6 from mathysgrapotte/modal

merge main

unify modal with tools

fetch_ontology from input

Merge pull request #5 from caraiz2001/add-biotools

unify main and modal

Merge branch 'main' into add-biotools

Merge pull request #4 from mathysgrapotte/add-initial-tools

Add tool to retrieve biotools information