fix bug for I/O display

add outputs

now works with a dictionary.

add type hints for serach ontology

change search_edam tool so that it returns strings instead of thing classes so that the model can directly pass those into other functions later

add bio.tools to the main function and outline the structure with missing TODOs

Merge pull request #9 from caraiz2001/add-bio-tools-ontology

Update tools/meta_yml_tools.py

bug fixes

Merge branch 'main' into add-bio-tools-ontology

modify main to include biotools

add id to ontology biotools

restructuring

merge main

unify modal with tools

Merge branch 'main' into add-biotools

Add tool to retrieve biotools information

add example call to the first agent

add meta.yml tools