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Sleeping
Nicolas Wagner commited on
Commit ·
bc714de
1
Parent(s): 741106a
update for correct metric and label
Browse files- app.py +12 -1
- src/display/utils.py +15 -5
- src/evaluation/compute_metrics.py +22 -9
- src/evaluation/load_labels.py +11 -21
- src/leaderboard/read_team_results.py +18 -3
- src/populate.py +6 -1
- src/submission/submit_csv.py +7 -6
- src/submission/validate_csv.py +47 -40
app.py
CHANGED
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@@ -82,7 +82,18 @@ def init_leaderboard(dataframe):
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valid_cols = [col for col in COLS if col is not None and isinstance(col, str) and col.strip() != ""]
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if not valid_cols:
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-
valid_cols = [
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if dataframe is None or dataframe.empty:
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empty_df = pd.DataFrame(columns=valid_cols)
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valid_cols = [col for col in COLS if col is not None and isinstance(col, str) and col.strip() != ""]
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if not valid_cols:
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valid_cols = [
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"Team Name",
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"Best Accuracy ⬆️",
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"Best F1 Score ⬆️",
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"Best Precision ⬆️",
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"Best Recall ⬆️",
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"Best TP ⬆️",
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"Best FP ⬇️",
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"Best FN ⬇️",
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"Best TN ⬆️",
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"Last Submission",
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]
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if dataframe is None or dataframe.empty:
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empty_df = pd.DataFrame(columns=valid_cols)
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src/display/utils.py
CHANGED
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@@ -25,8 +25,13 @@ class ColumnContent:
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class TeamColumn:
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team_name = ColumnContent("Team Name", "str", True, never_hidden=True)
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best_accuracy = ColumnContent("Best Accuracy ⬆️", "number", True)
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-
best_f1 = ColumnContent("Best F1 Score", "number", True)
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-
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last_submission_date = ColumnContent("Last Submission", "str", True)
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@@ -34,9 +39,14 @@ class TeamColumn:
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class SubmissionQueueColumn:
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team_name = ColumnContent("Team Name", "str", True)
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submission_date = ColumnContent("Submission Date", "str", True)
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-
accuracy = ColumnContent("Accuracy", "number", True)
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f1 = ColumnContent("F1 Score", "number", True)
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-
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status = ColumnContent("Status", "str", True)
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class TeamColumn:
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team_name = ColumnContent("Team Name", "str", True, never_hidden=True)
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best_accuracy = ColumnContent("Best Accuracy ⬆️", "number", True)
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best_f1 = ColumnContent("Best F1 Score ⬆️", "number", True)
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best_precision = ColumnContent("Best Precision ⬆️", "number", True)
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best_recall = ColumnContent("Best Recall ⬆️", "number", True)
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best_tp = ColumnContent("Best TP ⬆️", "number", True)
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best_fp = ColumnContent("Best FP ⬇️", "number", True)
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best_fn = ColumnContent("Best FN ⬇️", "number", True)
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best_tn = ColumnContent("Best TN ⬆️", "number", True)
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last_submission_date = ColumnContent("Last Submission", "str", True)
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class SubmissionQueueColumn:
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team_name = ColumnContent("Team Name", "str", True)
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submission_date = ColumnContent("Submission Date", "str", True)
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accuracy = ColumnContent("Accuracy ⬆️", "number", True)
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f1 = ColumnContent("F1 Score ⬆️", "number", True)
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precision = ColumnContent("Precision ⬆️", "number", True)
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recall = ColumnContent("Recall ⬆️", "number", True)
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tp = ColumnContent("TP ⬆️", "number", True)
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fp = ColumnContent("FP ⬇️", "number", True)
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fn = ColumnContent("FN ⬇️", "number", True)
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tn = ColumnContent("TN ⬆️", "number", True)
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status = ColumnContent("Status", "str", True)
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src/evaluation/compute_metrics.py
CHANGED
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@@ -1,18 +1,18 @@
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import pandas as pd
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-
from sklearn.metrics import accuracy_score, f1_score
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def compute_metrics(predictions_df: pd.DataFrame, true_labels: dict[str,
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y_true = []
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y_pred = []
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for _, row in predictions_df.iterrows():
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-
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if
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continue
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true_label = true_labels[
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pred_label = int(row["
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y_true.append(true_label)
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y_pred.append(pred_label)
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@@ -21,15 +21,28 @@ def compute_metrics(predictions_df: pd.DataFrame, true_labels: dict[str, int]) -
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return {
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"accuracy": 0.0,
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"f1": 0.0,
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"
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}
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accuracy = accuracy_score(y_true, y_pred)
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f1 = f1_score(y_true, y_pred, zero_division=0.0)
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-
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return {
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"accuracy": float(accuracy),
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"f1": float(f1),
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"
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}
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import pandas as pd
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from sklearn.metrics import accuracy_score, confusion_matrix, f1_score, precision_score, recall_score
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def compute_metrics(predictions_df: pd.DataFrame, true_labels: dict[str, float]) -> dict[str, float]:
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y_true = []
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y_pred = []
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for _, row in predictions_df.iterrows():
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id_val = str(row["id"]).strip()
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if id_val not in true_labels:
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continue
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true_label = int(true_labels[id_val])
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pred_label = int(row["label"])
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y_true.append(true_label)
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y_pred.append(pred_label)
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return {
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"accuracy": 0.0,
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"f1": 0.0,
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"precision": 0.0,
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"recall": 0.0,
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"tp": 0,
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"fp": 0,
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"fn": 0,
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"tn": 0,
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}
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accuracy = accuracy_score(y_true, y_pred)
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f1 = f1_score(y_true, y_pred, zero_division=0.0)
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precision = precision_score(y_true, y_pred, zero_division=0.0)
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recall = recall_score(y_true, y_pred, zero_division=0.0)
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tn, fp, fn, tp = confusion_matrix(y_true, y_pred).ravel()
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return {
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"accuracy": float(accuracy),
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"f1": float(f1),
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"precision": float(precision),
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"recall": float(recall),
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"tp": int(tp),
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"fp": int(fp),
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"fn": int(fn),
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"tn": int(tn),
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}
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src/evaluation/load_labels.py
CHANGED
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@@ -1,4 +1,3 @@
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import json
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import os
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from huggingface_hub import snapshot_download
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@@ -6,7 +5,7 @@ from huggingface_hub import snapshot_download
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from src.envs import TOKEN, TRUE_LABELS_PATH, TRUE_LABELS_REPO
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def load_true_labels() -> dict[str,
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os.makedirs(TRUE_LABELS_PATH, exist_ok=True)
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try:
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@@ -24,30 +23,21 @@ def load_true_labels() -> dict[str, int]:
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labels = {}
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for root, _, files in os.walk(TRUE_LABELS_PATH):
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for file in files:
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if file
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filepath = os.path.join(root, file)
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try:
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if isinstance(data, dict):
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labels.update(data)
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elif isinstance(data, list):
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for item in data:
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if isinstance(item, dict) and "file_name" in item and "label" in item:
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labels[item["file_name"]] = item["label"]
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except Exception:
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continue
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elif file.endswith(".csv"):
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import pandas as pd
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try:
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df = pd.read_csv(os.path.join(root, file))
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if "index" in df.columns and "label" in df.columns:
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for _, row in df.iterrows():
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continue
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return labels
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import os
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from huggingface_hub import snapshot_download
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from src.envs import TOKEN, TRUE_LABELS_PATH, TRUE_LABELS_REPO
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def load_true_labels() -> dict[str, float]:
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os.makedirs(TRUE_LABELS_PATH, exist_ok=True)
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try:
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labels = {}
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import pandas as pd
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for root, _, files in os.walk(TRUE_LABELS_PATH):
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for file in files:
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if file == "true_label.csv":
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filepath = os.path.join(root, file)
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try:
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df = pd.read_csv(filepath)
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if "id" in df.columns and "label" in df.columns:
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for _, row in df.iterrows():
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label_val = float(row["label"])
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if label_val in [0.0, 1.0]:
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labels[str(row["id"])] = label_val
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except Exception as e:
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print(f"Error loading true_label.csv: {e}")
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continue
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return labels
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src/leaderboard/read_team_results.py
CHANGED
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@@ -10,7 +10,12 @@ class TeamResult:
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team_name: str
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best_accuracy: float
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best_f1: float
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last_submission_date: str
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def to_dict(self):
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@@ -18,7 +23,12 @@ class TeamResult:
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TeamColumn.team_name.name: self.team_name,
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TeamColumn.best_accuracy.name: self.best_accuracy,
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TeamColumn.best_f1.name: self.best_f1,
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TeamColumn.
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TeamColumn.last_submission_date.name: self.last_submission_date,
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}
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@@ -42,7 +52,12 @@ def get_team_results(results_path: str) -> list[TeamResult]:
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team_name=data.get("team_name", ""),
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best_accuracy=data.get("best_accuracy", 0.0),
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best_f1=data.get("best_f1", 0.0),
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last_submission_date=data.get("last_submission_date", ""),
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)
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results.append(result)
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team_name: str
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best_accuracy: float
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best_f1: float
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best_precision: float
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best_recall: float
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best_tp: int
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best_fp: int
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best_fn: int
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best_tn: int
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last_submission_date: str
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def to_dict(self):
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TeamColumn.team_name.name: self.team_name,
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TeamColumn.best_accuracy.name: self.best_accuracy,
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TeamColumn.best_f1.name: self.best_f1,
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TeamColumn.best_precision.name: self.best_precision,
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TeamColumn.best_recall.name: self.best_recall,
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TeamColumn.best_tp.name: self.best_tp,
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TeamColumn.best_fp.name: self.best_fp,
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TeamColumn.best_fn.name: self.best_fn,
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TeamColumn.best_tn.name: self.best_tn,
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TeamColumn.last_submission_date.name: self.last_submission_date,
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}
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team_name=data.get("team_name", ""),
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best_accuracy=data.get("best_accuracy", 0.0),
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best_f1=data.get("best_f1", 0.0),
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best_precision=data.get("best_precision", 0.0),
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best_recall=data.get("best_recall", 0.0),
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best_tp=data.get("best_tp", 0),
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best_fp=data.get("best_fp", 0),
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best_fn=data.get("best_fn", 0),
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best_tn=data.get("best_tn", 0),
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last_submission_date=data.get("last_submission_date", ""),
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)
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results.append(result)
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src/populate.py
CHANGED
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@@ -44,7 +44,12 @@ def get_submission_queue_df(save_path: str, cols: list) -> list[pd.DataFrame]:
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SubmissionQueueColumn.submission_date.name: data.get("timestamp", ""),
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SubmissionQueueColumn.accuracy.name: data.get("scores", {}).get("accuracy", 0.0),
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SubmissionQueueColumn.f1.name: data.get("scores", {}).get("f1", 0.0),
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SubmissionQueueColumn.
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SubmissionQueueColumn.status.name: data.get("status", "UNKNOWN"),
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}
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all_submissions.append(submission_data)
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SubmissionQueueColumn.submission_date.name: data.get("timestamp", ""),
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SubmissionQueueColumn.accuracy.name: data.get("scores", {}).get("accuracy", 0.0),
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SubmissionQueueColumn.f1.name: data.get("scores", {}).get("f1", 0.0),
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SubmissionQueueColumn.precision.name: data.get("scores", {}).get("precision", 0.0),
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SubmissionQueueColumn.recall.name: data.get("scores", {}).get("recall", 0.0),
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SubmissionQueueColumn.tp.name: data.get("scores", {}).get("tp", 0),
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SubmissionQueueColumn.fp.name: data.get("scores", {}).get("fp", 0),
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SubmissionQueueColumn.fn.name: data.get("scores", {}).get("fn", 0),
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SubmissionQueueColumn.tn.name: data.get("scores", {}).get("tn", 0),
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SubmissionQueueColumn.status.name: data.get("status", "UNKNOWN"),
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}
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all_submissions.append(submission_data)
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src/submission/submit_csv.py
CHANGED
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@@ -89,18 +89,14 @@ def should_update_scores(new_scores: dict, best_scores: dict | None) -> bool:
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new_accuracy = new_scores.get("accuracy", 0.0)
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new_f1 = new_scores.get("f1", 0.0)
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-
new_error = new_scores.get("error_rate", 1.0)
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best_accuracy = best_scores.get("best_accuracy", 0.0)
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best_f1 = best_scores.get("best_f1", 0.0)
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-
best_error = best_scores.get("best_error_rate", 1.0)
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if new_accuracy > best_accuracy:
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return True
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if new_accuracy == best_accuracy and new_f1 > best_f1:
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return True
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-
if new_accuracy == best_accuracy and new_f1 == best_f1 and new_error < best_error:
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-
return True
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return False
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@@ -160,12 +156,17 @@ def submit_csv(token: str, csv_content: str) -> tuple[bool, str]:
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"team_name": team_name,
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"best_accuracy": scores["accuracy"],
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"best_f1": scores["f1"],
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-
"
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"last_submission_date": timestamp,
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}
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save_team_best_scores(team_name, updated_scores)
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status = "ACCEPTED"
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-
message = f"Submission accepted! Your scores: Accuracy={scores['accuracy']:.4f}, F1={scores['f1']:.4f},
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else:
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status = "REJECTED"
|
| 171 |
best_acc = best_scores.get("best_accuracy", 0.0) if best_scores else 0.0
|
|
|
|
| 89 |
|
| 90 |
new_accuracy = new_scores.get("accuracy", 0.0)
|
| 91 |
new_f1 = new_scores.get("f1", 0.0)
|
|
|
|
| 92 |
|
| 93 |
best_accuracy = best_scores.get("best_accuracy", 0.0)
|
| 94 |
best_f1 = best_scores.get("best_f1", 0.0)
|
|
|
|
| 95 |
|
| 96 |
if new_accuracy > best_accuracy:
|
| 97 |
return True
|
| 98 |
if new_accuracy == best_accuracy and new_f1 > best_f1:
|
| 99 |
return True
|
|
|
|
|
|
|
| 100 |
|
| 101 |
return False
|
| 102 |
|
|
|
|
| 156 |
"team_name": team_name,
|
| 157 |
"best_accuracy": scores["accuracy"],
|
| 158 |
"best_f1": scores["f1"],
|
| 159 |
+
"best_precision": scores["precision"],
|
| 160 |
+
"best_recall": scores["recall"],
|
| 161 |
+
"best_tp": scores["tp"],
|
| 162 |
+
"best_fp": scores["fp"],
|
| 163 |
+
"best_fn": scores["fn"],
|
| 164 |
+
"best_tn": scores["tn"],
|
| 165 |
"last_submission_date": timestamp,
|
| 166 |
}
|
| 167 |
save_team_best_scores(team_name, updated_scores)
|
| 168 |
status = "ACCEPTED"
|
| 169 |
+
message = f"Submission accepted! Your scores: Accuracy={scores['accuracy']:.4f}, F1={scores['f1']:.4f}, Precision={scores['precision']:.4f}, Recall={scores['recall']:.4f}, TP={scores['tp']}, FP={scores['fp']}, FN={scores['fn']}, TN={scores['tn']}"
|
| 170 |
else:
|
| 171 |
status = "REJECTED"
|
| 172 |
best_acc = best_scores.get("best_accuracy", 0.0) if best_scores else 0.0
|
src/submission/validate_csv.py
CHANGED
|
@@ -3,30 +3,25 @@ from io import StringIO
|
|
| 3 |
import pandas as pd
|
| 4 |
|
| 5 |
|
| 6 |
-
def
|
| 7 |
-
if pd.isna(
|
| 8 |
return None
|
| 9 |
|
| 10 |
-
if isinstance(
|
| 11 |
-
if
|
| 12 |
-
return
|
| 13 |
-
if pred == 0.0 or pred == 1.0:
|
| 14 |
-
return int(pred)
|
| 15 |
return None
|
| 16 |
|
| 17 |
-
if isinstance(
|
| 18 |
-
|
| 19 |
-
if
|
| 20 |
-
|
| 21 |
-
return 0
|
| 22 |
-
else:
|
| 23 |
-
return 1
|
| 24 |
return None
|
| 25 |
|
| 26 |
return None
|
| 27 |
|
| 28 |
|
| 29 |
-
def validate_csv(csv_content: str, true_labels: dict[str,
|
| 30 |
if not csv_content or not csv_content.strip():
|
| 31 |
return False, "CSV content is empty", None
|
| 32 |
|
|
@@ -35,49 +30,61 @@ def validate_csv(csv_content: str, true_labels: dict[str, int]) -> tuple[bool, s
|
|
| 35 |
except Exception as e:
|
| 36 |
return False, f"Invalid CSV format: {str(e)}", None
|
| 37 |
|
| 38 |
-
if "
|
| 39 |
-
return False, "CSV must contain '
|
| 40 |
|
| 41 |
-
if "
|
| 42 |
-
return False, "CSV must contain '
|
| 43 |
|
| 44 |
if df.empty:
|
| 45 |
return False, "CSV is empty", None
|
| 46 |
|
| 47 |
-
df["
|
| 48 |
|
| 49 |
-
if df["
|
| 50 |
-
return False, "
|
| 51 |
|
| 52 |
-
if df["
|
| 53 |
-
return False, "
|
| 54 |
|
| 55 |
-
|
| 56 |
-
|
| 57 |
|
| 58 |
for idx, row in df.iterrows():
|
| 59 |
-
|
| 60 |
-
|
| 61 |
|
| 62 |
-
if
|
| 63 |
-
|
| 64 |
else:
|
| 65 |
-
|
| 66 |
|
| 67 |
-
if
|
| 68 |
-
return False, "Invalid
|
| 69 |
|
| 70 |
-
df["
|
| 71 |
|
| 72 |
-
|
| 73 |
-
for
|
| 74 |
-
if str(
|
| 75 |
-
|
| 76 |
|
| 77 |
-
if
|
| 78 |
return (
|
| 79 |
False,
|
| 80 |
-
f"Unknown
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 81 |
None,
|
| 82 |
)
|
| 83 |
|
|
|
|
| 3 |
import pandas as pd
|
| 4 |
|
| 5 |
|
| 6 |
+
def normalize_label(label: any) -> float | None:
|
| 7 |
+
if pd.isna(label):
|
| 8 |
return None
|
| 9 |
|
| 10 |
+
if isinstance(label, (int, float)):
|
| 11 |
+
if label == 0.0 or label == 1.0:
|
| 12 |
+
return float(label)
|
|
|
|
|
|
|
| 13 |
return None
|
| 14 |
|
| 15 |
+
if isinstance(label, str):
|
| 16 |
+
label_stripped = label.strip()
|
| 17 |
+
if label_stripped in ["0.0", "1.0"]:
|
| 18 |
+
return float(label_stripped)
|
|
|
|
|
|
|
|
|
|
| 19 |
return None
|
| 20 |
|
| 21 |
return None
|
| 22 |
|
| 23 |
|
| 24 |
+
def validate_csv(csv_content: str, true_labels: dict[str, float]) -> tuple[bool, str, pd.DataFrame | None]:
|
| 25 |
if not csv_content or not csv_content.strip():
|
| 26 |
return False, "CSV content is empty", None
|
| 27 |
|
|
|
|
| 30 |
except Exception as e:
|
| 31 |
return False, f"Invalid CSV format: {str(e)}", None
|
| 32 |
|
| 33 |
+
if "id" not in df.columns:
|
| 34 |
+
return False, "CSV must contain 'id' column", None
|
| 35 |
|
| 36 |
+
if "label" not in df.columns:
|
| 37 |
+
return False, "CSV must contain 'label' column", None
|
| 38 |
|
| 39 |
if df.empty:
|
| 40 |
return False, "CSV is empty", None
|
| 41 |
|
| 42 |
+
df["id"] = df["id"].astype(str).str.strip()
|
| 43 |
|
| 44 |
+
if df["id"].isna().any():
|
| 45 |
+
return False, "id column contains missing values", None
|
| 46 |
|
| 47 |
+
if df["label"].isna().any():
|
| 48 |
+
return False, "label column contains missing values", None
|
| 49 |
|
| 50 |
+
normalized_labels = []
|
| 51 |
+
invalid_labels = []
|
| 52 |
|
| 53 |
for idx, row in df.iterrows():
|
| 54 |
+
id_val = str(row["id"]).strip()
|
| 55 |
+
label = normalize_label(row["label"])
|
| 56 |
|
| 57 |
+
if label is None:
|
| 58 |
+
invalid_labels.append(f"Row {idx + 1}: invalid label value '{row['label']}' (must be 0.0 or 1.0)")
|
| 59 |
else:
|
| 60 |
+
normalized_labels.append(label)
|
| 61 |
|
| 62 |
+
if invalid_labels:
|
| 63 |
+
return False, "Invalid labels found:\n" + "\n".join(invalid_labels[:5]), None
|
| 64 |
|
| 65 |
+
df["label"] = normalized_labels
|
| 66 |
|
| 67 |
+
unknown_ids = []
|
| 68 |
+
for id_val in df["id"]:
|
| 69 |
+
if str(id_val) not in true_labels:
|
| 70 |
+
unknown_ids.append(str(id_val))
|
| 71 |
|
| 72 |
+
if unknown_ids:
|
| 73 |
return (
|
| 74 |
False,
|
| 75 |
+
f"Unknown IDs found: {', '.join(unknown_ids[:5])}{'...' if len(unknown_ids) > 5 else ''}",
|
| 76 |
+
None,
|
| 77 |
+
)
|
| 78 |
+
|
| 79 |
+
missing_ids = []
|
| 80 |
+
for true_id in true_labels.keys():
|
| 81 |
+
if true_id not in df["id"].values:
|
| 82 |
+
missing_ids.append(true_id)
|
| 83 |
+
|
| 84 |
+
if missing_ids:
|
| 85 |
+
return (
|
| 86 |
+
False,
|
| 87 |
+
f"Missing IDs from true labels: {', '.join(missing_ids[:5])}{'...' if len(missing_ids) > 5 else ''} (total: {len(missing_ids)})",
|
| 88 |
None,
|
| 89 |
)
|
| 90 |
|