Spaces:
Runtime error
Runtime error
Delete ingest.py
Browse files
ingest.py
DELETED
|
@@ -1,158 +0,0 @@
|
|
| 1 |
-
import os
|
| 2 |
-
from tqdm import tqdm
|
| 3 |
-
import pathlib
|
| 4 |
-
|
| 5 |
-
from langchain_community.document_loaders import TextLoader
|
| 6 |
-
from langchain.docstore.document import Document
|
| 7 |
-
from langchain_community.embeddings import HuggingFaceEmbeddings
|
| 8 |
-
from langchain.text_splitter import RecursiveCharacterTextSplitter
|
| 9 |
-
from langchain_community.vectorstores import FAISS
|
| 10 |
-
|
| 11 |
-
os.environ["RAY_memory_monitor_refresh_ms"] = "0"
|
| 12 |
-
os.environ["RAY_DEDUP_LOGS"] = "0"
|
| 13 |
-
import ray
|
| 14 |
-
|
| 15 |
-
from common import DATASET_DIR, EMBEDDING_MODEL_NAME, MODEL_KWARGS, VECTORSTORE_FILENAME
|
| 16 |
-
|
| 17 |
-
# Each document is parsed on the same CPU, to decrease paging and data copies, and up to the the number of vCPUs.
|
| 18 |
-
CONCURRENCY = 32
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
# @ray.remote(num_cpus=1) # Outside a container, num_cpus=1 might speed things dramatically.
|
| 22 |
-
@ray.remote
|
| 23 |
-
def parse_doc(document_path: str) -> Document:
|
| 24 |
-
print("Loading", document_path)
|
| 25 |
-
loader = TextLoader(document_path)
|
| 26 |
-
langchain_dataset_documents = loader.load()
|
| 27 |
-
|
| 28 |
-
# Update the metadata with the proper metadata JSON file, parsed from Arxiv.com
|
| 29 |
-
return langchain_dataset_documents
|
| 30 |
-
|
| 31 |
-
|
| 32 |
-
def add_documents_to_vector_store(
|
| 33 |
-
vector_store, new_documents, text_splitter, embeddings
|
| 34 |
-
):
|
| 35 |
-
split_docs = text_splitter.split_documents(new_documents)
|
| 36 |
-
# print("Embedding vectors...")
|
| 37 |
-
store = FAISS.from_documents(split_docs, embeddings)
|
| 38 |
-
if vector_store is None:
|
| 39 |
-
vector_store = store
|
| 40 |
-
else:
|
| 41 |
-
print("Updating vector store", store)
|
| 42 |
-
vector_store.merge_from(store)
|
| 43 |
-
return vector_store
|
| 44 |
-
|
| 45 |
-
|
| 46 |
-
def ingest_dataset_to_vectore_store(
|
| 47 |
-
vectorstore_filename: str, dataset_directory: os.PathLike
|
| 48 |
-
):
|
| 49 |
-
ray.init()
|
| 50 |
-
vector_store = None
|
| 51 |
-
text_splitter = RecursiveCharacterTextSplitter(
|
| 52 |
-
chunk_size=160, # TODO: Finetune
|
| 53 |
-
chunk_overlap=40, # TODO: Finetune
|
| 54 |
-
length_function=len,
|
| 55 |
-
)
|
| 56 |
-
|
| 57 |
-
dataset_documents = []
|
| 58 |
-
dataset_dir_path = pathlib.Path(dataset_directory)
|
| 59 |
-
dataset_dir_path.mkdir(exist_ok=True)
|
| 60 |
-
|
| 61 |
-
for _dirname in os.listdir(str(dataset_dir_path)):
|
| 62 |
-
if _dirname.startswith("."):
|
| 63 |
-
continue
|
| 64 |
-
catagory_path = dataset_dir_path / pathlib.Path(_dirname)
|
| 65 |
-
for filename in os.listdir(str(dataset_dir_path / catagory_path)):
|
| 66 |
-
dataset_path = dataset_dir_path / catagory_path / pathlib.Path(filename)
|
| 67 |
-
dataset_documents.append(str(dataset_path))
|
| 68 |
-
print(dataset_documents)
|
| 69 |
-
print(f"Found {len(dataset_documents)} items in dataset: ")
|
| 70 |
-
langchain_documents = []
|
| 71 |
-
|
| 72 |
-
model_name = EMBEDDING_MODEL_NAME
|
| 73 |
-
model_kwargs = MODEL_KWARGS
|
| 74 |
-
print("Creating huggingface embeddings for ", model_name)
|
| 75 |
-
embeddings = HuggingFaceEmbeddings(model_name=model_name, model_kwargs=model_kwargs)
|
| 76 |
-
|
| 77 |
-
if vector_store is None and os.path.exists(vectorstore_filename):
|
| 78 |
-
print("Loading existing vector store from", vectorstore_filename)
|
| 79 |
-
vector_store = FAISS.load_local(
|
| 80 |
-
vectorstore_filename, embeddings, allow_dangerous_deserialization=True
|
| 81 |
-
)
|
| 82 |
-
|
| 83 |
-
jobs = []
|
| 84 |
-
docs_count = len(dataset_documents)
|
| 85 |
-
failed = 0
|
| 86 |
-
print(f"Embedding {docs_count} documents with Ray...")
|
| 87 |
-
for i, document in enumerate(tqdm(dataset_documents)):
|
| 88 |
-
try:
|
| 89 |
-
# print(f"Submitting job ", i)
|
| 90 |
-
job = parse_doc.remote(document)
|
| 91 |
-
jobs.append(job)
|
| 92 |
-
|
| 93 |
-
if i > 1 and i <= docs_count and i % CONCURRENCY == 0:
|
| 94 |
-
if langchain_documents:
|
| 95 |
-
vector_store = add_documents_to_vector_store(
|
| 96 |
-
vector_store, langchain_documents, text_splitter, embeddings
|
| 97 |
-
)
|
| 98 |
-
print(f"\nSaving vector store to disk at {vectorstore_filename}...")
|
| 99 |
-
try:
|
| 100 |
-
os.unlink(vectorstore_filename)
|
| 101 |
-
except:
|
| 102 |
-
...
|
| 103 |
-
|
| 104 |
-
vector_store.save_local(vectorstore_filename)
|
| 105 |
-
langchain_documents = []
|
| 106 |
-
jobs = []
|
| 107 |
-
|
| 108 |
-
# Block jobs every CONCURRENCY iterations
|
| 109 |
-
if i > 1 and i % CONCURRENCY == 0:
|
| 110 |
-
# print(f"Collecting {len(jobs)} jobs...")
|
| 111 |
-
for _ in jobs:
|
| 112 |
-
try:
|
| 113 |
-
# print("waiting for ray job ", _)
|
| 114 |
-
data = ray.get(_)
|
| 115 |
-
langchain_documents.extend(data)
|
| 116 |
-
except Exception as e:
|
| 117 |
-
print("error in job: ", e)
|
| 118 |
-
continue
|
| 119 |
-
except Exception as e:
|
| 120 |
-
print(f"\n\nERROR reading dataset {i}:", e)
|
| 121 |
-
failed = failed + 1
|
| 122 |
-
continue
|
| 123 |
-
|
| 124 |
-
# print(f"Collecting {len(jobs)} jobs...")
|
| 125 |
-
for _ in jobs:
|
| 126 |
-
try:
|
| 127 |
-
print("waiting for ray job ", _)
|
| 128 |
-
data = ray.get(_)
|
| 129 |
-
langchain_documents.extend(data)
|
| 130 |
-
except Exception as e:
|
| 131 |
-
print("error in job: ", e)
|
| 132 |
-
continue
|
| 133 |
-
|
| 134 |
-
if langchain_documents:
|
| 135 |
-
vector_store = add_documents_to_vector_store(
|
| 136 |
-
vector_store, langchain_documents, text_splitter, embeddings
|
| 137 |
-
)
|
| 138 |
-
print(f"\nSaving vector store to disk at {vectorstore_filename}...")
|
| 139 |
-
try:
|
| 140 |
-
os.unlink(vectorstore_filename)
|
| 141 |
-
except:
|
| 142 |
-
...
|
| 143 |
-
|
| 144 |
-
vector_store.save_local(vectorstore_filename)
|
| 145 |
-
|
| 146 |
-
return vector_store
|
| 147 |
-
|
| 148 |
-
|
| 149 |
-
def main():
|
| 150 |
-
vectorstore_filename = VECTORSTORE_FILENAME
|
| 151 |
-
dataset_directory = DATASET_DIR
|
| 152 |
-
ingest_dataset_to_vectore_store(
|
| 153 |
-
vectorstore_filename=vectorstore_filename, dataset_directory=dataset_directory
|
| 154 |
-
)
|
| 155 |
-
|
| 156 |
-
|
| 157 |
-
if __name__ == "__main__":
|
| 158 |
-
main()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|