.env.example

# Clinical NLP Pipeline — environment variables
# Copy this file to .env and fill in your values.
# Never commit .env to version control.

# ── Database ──────────────────────────────────────────────────────
# Local SQLite (default — no config needed)
# DATABASE_URL=sqlite:///./clinical_nlp.db

# Supabase PostgreSQL (for Streamlit Cloud deployment)
# DATABASE_URL=postgresql://postgres:<password>@db.<project>.supabase.co:5432/postgres

# ── Models ────────────────────────────────────────────────────────
# NER_MODEL=en_core_sci_lg
# CLASSIFIER_MODEL=emilyalsentzer/Bio_ClinicalBERT
# EMBEDDING_MODEL=pritamdeka/BioBERT-mnli-snli-scinli-scitail-mednli-stsb

# ── Classifier ────────────────────────────────────────────────────
# CLASSIFIER_TASK=severity
# TRAIN_EPOCHS=3
# TRAIN_BATCH_SIZE=16
# TRAIN_LR=2e-5
# TRAIN_MAX_LENGTH=512

# ── ICD-10 mapping ────────────────────────────────────────────────
# ICD10_FUZZY_THRESHOLD=80
# ICD10_EMBEDDING_THRESHOLD=0.75
# ICD10_TOP_K=3

# ── API ───────────────────────────────────────────────────────────
# API_PORT=8000
# API_DEBUG=true

# ── Dashboard ─────────────────────────────────────────────────────
# API_BASE_URL=http://localhost:8000

# ── Data source ───────────────────────────────────────────────────
# DATA_SOURCE=mtsamples    # or: mimic

# ── Logging ───────────────────────────────────────────────────────
# LOG_LEVEL=INFO