scAnalyzer Studio

Full single-cell RNA-seq pipeline.

1. Dataset

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Quality Control

Min Genes & Max Genes

Max Mito % & Min Cells

Run Scrublet

Norm & Integration

Normalization

Imputation

k (Neighbors)

Threshold

n_pcs

Batch Correction

DimRed & Networks

PCA Comps

Neighbors (K)

UMAP

t-SNE

GRN Inference Transcription Factors (Comma Separated)

Analytics

Clustering & Res/K

Trajectory (Root & Branches)

Interactive HTML Plots:

2D UMAP 3D PCA t-SNE Violins Heatmap

Processing single-cell pipeline...

Keep an eye on your terminal. Large datasets will take time.

Success