Create app.py
Browse files
app.py
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| 1 |
+
import torch
|
| 2 |
+
import gradio as gr
|
| 3 |
+
import faiss
|
| 4 |
+
import numpy as np
|
| 5 |
+
|
| 6 |
+
from transformers import AutoTokenizer, AutoModelForSeq2SeqLM
|
| 7 |
+
from sentence_transformers import SentenceTransformer
|
| 8 |
+
|
| 9 |
+
# Models
|
| 10 |
+
GEN_MODEL_NAME = "google/flan-t5-small"
|
| 11 |
+
EMB_MODEL_NAME = "sentence-transformers/all-MiniLM-L6-v2"
|
| 12 |
+
|
| 13 |
+
DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
|
| 14 |
+
|
| 15 |
+
tokenizer = AutoTokenizer.from_pretrained(GEN_MODEL_NAME)
|
| 16 |
+
gen_model = AutoModelForSeq2SeqLM.from_pretrained(GEN_MODEL_NAME).to(DEVICE)
|
| 17 |
+
embedder = SentenceTransformer(EMB_MODEL_NAME, device=DEVICE)
|
| 18 |
+
|
| 19 |
+
DISCLAIMER = (
|
| 20 |
+
"Disclaimer: This tool provides general health information only. "
|
| 21 |
+
"It does not give medical advice, diagnosis, or prescriptions. "
|
| 22 |
+
"Always speak to a qualified healthcare professional for personal medical concerns or emergencies."
|
| 23 |
+
)
|
| 24 |
+
|
| 25 |
+
health_facts = [
|
| 26 |
+
{
|
| 27 |
+
"id": 1,
|
| 28 |
+
"topic": "Hypertension",
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| 29 |
+
"text": (
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| 30 |
+
"Hypertension is a long-term condition in which the force of blood against the walls of the arteries is consistently too high. "
|
| 31 |
+
"Over time, uncontrolled high blood pressure can damage blood vessels and organs such as the heart, brain, kidneys, and eyes, increasing the risk of heart disease and stroke. "
|
| 32 |
+
"Many people with hypertension do not have obvious symptoms, which is why it is sometimes called a 'silent killer', so regular blood pressure checks are important. "
|
| 33 |
+
"Lifestyle measures such as reducing salt intake, engaging in regular physical activity, managing stress, maintaining a healthy weight, and avoiding tobacco products play a major role in controlling blood pressure."
|
| 34 |
+
)
|
| 35 |
+
},
|
| 36 |
+
{
|
| 37 |
+
"id": 2,
|
| 38 |
+
"topic": "Diabetes",
|
| 39 |
+
"text": (
|
| 40 |
+
"Type 2 diabetes is a chronic condition in which the body does not use insulin properly or does not produce enough insulin, leading to elevated blood sugar levels over time. "
|
| 41 |
+
"If blood sugar remains high for many years, it can damage blood vessels and nerves, affecting the eyes, kidneys, heart, and feet. "
|
| 42 |
+
"People with type 2 diabetes are encouraged to adopt habits such as eating balanced meals with controlled portions, staying physically active, and attending regular medical checkups to monitor blood sugar and related complications. "
|
| 43 |
+
"Early detection, lifestyle changes, and appropriate medical follow-up can significantly reduce the risk of serious long-term problems."
|
| 44 |
+
)
|
| 45 |
+
},
|
| 46 |
+
{
|
| 47 |
+
"id": 3,
|
| 48 |
+
"topic": "Pregnancy nutrition",
|
| 49 |
+
"text": (
|
| 50 |
+
"During pregnancy, good nutrition supports the health of both the mother and the developing baby. "
|
| 51 |
+
"Balanced meals that include vegetables, fruits, whole grains, sources of protein, and healthy fats help supply essential vitamins and minerals. "
|
| 52 |
+
"Nutrients such as folic acid and iron are especially important in pregnancy because they support the baby’s development and help prevent certain birth defects and anemia. "
|
| 53 |
+
"Pregnant women are advised to avoid alcohol, smoking, and recreational drugs, and to discuss any supplements or herbal remedies with a qualified healthcare professional during antenatal visits."
|
| 54 |
+
)
|
| 55 |
+
},
|
| 56 |
+
{
|
| 57 |
+
"id": 4,
|
| 58 |
+
"topic": "Vaccination",
|
| 59 |
+
"text": (
|
| 60 |
+
"Vaccination is a safe and effective way to train the immune system to recognize and fight specific infections without causing the actual disease. "
|
| 61 |
+
"Many vaccines are given during childhood, but some are also recommended in adulthood, in pregnancy, and for people with certain health conditions. "
|
| 62 |
+
"Keeping vaccination schedules up to date helps protect not only the individual but also the wider community by reducing the spread of infectious diseases. "
|
| 63 |
+
"Delaying or skipping recommended vaccines can increase the risk of outbreaks and leave vulnerable groups, such as young children and older adults, unprotected."
|
| 64 |
+
)
|
| 65 |
+
},
|
| 66 |
+
{
|
| 67 |
+
"id": 5,
|
| 68 |
+
"topic": "Common cold",
|
| 69 |
+
"text": (
|
| 70 |
+
"The common cold is usually a mild infection of the nose and throat caused by viruses, often leading to symptoms such as a runny nose, sore throat, sneezing, and mild cough. "
|
| 71 |
+
"Most colds improve on their own within a week or two, and complications are uncommon in otherwise healthy people. "
|
| 72 |
+
"Simple measures such as resting, drinking enough fluids, and using home remedies for comfort can help people feel better while the body fights the infection. "
|
| 73 |
+
"Because the common cold is viral, antibiotics, which are designed to treat bacterial infections, do not cure it and are generally not needed."
|
| 74 |
+
)
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"id": 6,
|
| 78 |
+
"topic": "Asthma",
|
| 79 |
+
"text": (
|
| 80 |
+
"Asthma is a long-term condition in which the airways become inflamed and narrow, making it harder for air to move in and out of the lungs. "
|
| 81 |
+
"People with asthma may experience episodes of wheezing, chest tightness, coughing, and shortness of breath, which can be mild or severe. "
|
| 82 |
+
"Common triggers include dust, smoke, cold air, respiratory infections, strong smells, and sometimes exercise. "
|
| 83 |
+
"Understanding personal triggers, avoiding them when possible, and following an asthma action plan from a healthcare professional helps reduce symptoms and improve quality of life."
|
| 84 |
+
)
|
| 85 |
+
},
|
| 86 |
+
{
|
| 87 |
+
"id": 7,
|
| 88 |
+
"topic": "Malaria prevention",
|
| 89 |
+
"text": (
|
| 90 |
+
"Malaria is a potentially serious disease transmitted by the bite of infected Anopheles mosquitoes, and it is common in many tropical and subtropical regions. "
|
| 91 |
+
"Early symptoms often include fever, chills, headache, and body pains, which can resemble other illnesses, so testing is important when malaria is suspected. "
|
| 92 |
+
"Prevention strategies include sleeping under insecticide-treated mosquito nets, using protective clothing, and reducing mosquito breeding sites such as stagnant water around the home. "
|
| 93 |
+
"Prompt testing and treatment when fever occurs in malaria-endemic areas help prevent severe illness and complications."
|
| 94 |
+
)
|
| 95 |
+
},
|
| 96 |
+
{
|
| 97 |
+
"id": 8,
|
| 98 |
+
"topic": "Tuberculosis",
|
| 99 |
+
"text": (
|
| 100 |
+
"Tuberculosis (TB) is an infectious disease caused by bacteria that most often affect the lungs. "
|
| 101 |
+
"It spreads through the air when a person with active TB in the lungs coughs, sneezes, or speaks, and someone nearby breathes in the droplets. "
|
| 102 |
+
"Common symptoms include a persistent cough lasting more than a few weeks, chest pain, weight loss, night sweats, and fever. "
|
| 103 |
+
"Early detection, adherence to the full course of treatment prescribed by a healthcare professional, and support from TB programs are important to cure the disease and reduce transmission."
|
| 104 |
+
)
|
| 105 |
+
},
|
| 106 |
+
{
|
| 107 |
+
"id": 9,
|
| 108 |
+
"topic": "HIV basics",
|
| 109 |
+
"text": (
|
| 110 |
+
"HIV is a virus that weakens the immune system by attacking specific cells that help the body fight infections. "
|
| 111 |
+
"Without proper treatment and care, ongoing damage to the immune system can eventually lead to AIDS, which is the advanced stage of HIV infection. "
|
| 112 |
+
"HIV can be transmitted through unprotected sex, sharing needles or sharp instruments that break the skin, and from mother to child during pregnancy, birth, or breastfeeding without preventive measures. "
|
| 113 |
+
"Regular HIV testing, safer sex practices, and access to appropriate medical care help people living with HIV maintain their health and reduce the risk of transmission to others."
|
| 114 |
+
)
|
| 115 |
+
},
|
| 116 |
+
{
|
| 117 |
+
"id": 10,
|
| 118 |
+
"topic": "Mental health",
|
| 119 |
+
"text": (
|
| 120 |
+
"Mental health refers to a person’s emotional, psychological, and social well-being, influencing how they think, feel, and behave in daily life. "
|
| 121 |
+
"Challenges such as prolonged sadness, strong anxiety, loss of interest in usual activities, difficulty concentrating, or major changes in sleep and appetite can signal a mental health concern. "
|
| 122 |
+
"Life events, ongoing stress, physical illness, and social or economic pressures can all affect mental health. "
|
| 123 |
+
"Talking to trusted people, seeking professional support, and reducing stigma around mental health conditions are important steps in promoting overall wellbeing."
|
| 124 |
+
)
|
| 125 |
+
},
|
| 126 |
+
{
|
| 127 |
+
"id": 11,
|
| 128 |
+
"topic": "Healthy eating",
|
| 129 |
+
"text": (
|
| 130 |
+
"Healthy eating means choosing a variety of foods that provide the nutrients the body needs to function well and stay strong. "
|
| 131 |
+
"Meals that include vegetables, fruits, whole grains, beans or lean animal proteins, and small amounts of healthy fats help support energy, growth, and disease prevention. "
|
| 132 |
+
"Limiting foods and drinks that are very high in sugar, salt, and unhealthy fats can reduce the risk of conditions such as obesity, hypertension, and type 2 diabetes. "
|
| 133 |
+
"Regular meal patterns, mindful portion sizes, and drinking enough safe water are also important parts of a healthy eating routine."
|
| 134 |
+
)
|
| 135 |
+
},
|
| 136 |
+
{
|
| 137 |
+
"id": 12,
|
| 138 |
+
"topic": "Physical activity",
|
| 139 |
+
"text": (
|
| 140 |
+
"Physical activity includes any body movement that uses energy, from walking and household chores to structured exercise and sports. "
|
| 141 |
+
"Regular movement helps maintain a healthy weight, supports heart and lung function, strengthens muscles and bones, and can improve mood and sleep quality. "
|
| 142 |
+
"Even small amounts of daily activity are beneficial, especially for people who have been mostly inactive, and it can be built up gradually. "
|
| 143 |
+
"Choosing activities that are enjoyable and suitable for a person’s age and health status makes it easier to stay active over the long term."
|
| 144 |
+
)
|
| 145 |
+
},
|
| 146 |
+
{
|
| 147 |
+
"id": 13,
|
| 148 |
+
"topic": "Childhood fever",
|
| 149 |
+
"text": (
|
| 150 |
+
"Fever in children is usually a sign that the body is fighting an infection, which may be caused by viruses, bacteria, or other germs. "
|
| 151 |
+
"Caregivers should pay attention to the child’s overall behavior, ability to drink fluids, and level of alertness, not just the temperature reading. "
|
| 152 |
+
"Warning signs that require urgent medical attention include difficulty breathing, convulsions, persistent vomiting, inability to drink, unusual sleepiness, or a fever that lasts several days. "
|
| 153 |
+
"Keeping the child comfortable, offering fluids, and seeking professional advice when worried helps ensure that serious conditions are not missed."
|
| 154 |
+
)
|
| 155 |
+
},
|
| 156 |
+
{
|
| 157 |
+
"id": 14,
|
| 158 |
+
"topic": "Diarrhoea and dehydration",
|
| 159 |
+
"text": (
|
| 160 |
+
"Diarrhoea is the passing of loose or watery stools more often than usual and can be caused by infections, food-related issues, or other conditions. "
|
| 161 |
+
"One of the main dangers of diarrhoea, especially in young children and older adults, is dehydration, which happens when the body loses too much water and salts. "
|
| 162 |
+
"Signs of dehydration include dry mouth, reduced urination, unusual tiredness, dizziness, and in children, sunken eyes or a sunken soft spot on the head. "
|
| 163 |
+
"Offering safe fluids, watching for warning signs, and seeking medical care when diarrhoea is severe, persistent, or accompanied by blood or high fever are important steps."
|
| 164 |
+
)
|
| 165 |
+
},
|
| 166 |
+
{
|
| 167 |
+
"id": 15,
|
| 168 |
+
"topic": "Menstrual health",
|
| 169 |
+
"text": (
|
| 170 |
+
"Menstruation is a normal monthly process in people with a uterus, where the lining of the womb is shed if pregnancy has not occurred. "
|
| 171 |
+
"Cycle length and flow can vary between individuals, but sudden major changes, very heavy bleeding, or severe pain may require medical evaluation. "
|
| 172 |
+
"Using clean menstrual products, changing them regularly, and maintaining good personal hygiene help prevent irritation and infections. "
|
| 173 |
+
"Open, accurate information about menstruation supports dignity, reduces shame, and enables people to manage their periods safely and confidently."
|
| 174 |
+
)
|
| 175 |
+
},
|
| 176 |
+
{
|
| 177 |
+
"id": 16,
|
| 178 |
+
"topic": "Oral and dental hygiene",
|
| 179 |
+
"text": (
|
| 180 |
+
"Good oral hygiene helps keep the teeth, gums, and mouth healthy, which also supports overall wellbeing. "
|
| 181 |
+
"Brushing teeth at least twice a day with a suitable toothbrush and fluoride toothpaste helps remove food particles and plaque, reducing the risk of tooth decay and gum disease. "
|
| 182 |
+
"Cleaning between the teeth, limiting sugary snacks and drinks, and visiting a dental professional for regular checks are also important. "
|
| 183 |
+
"Ignoring oral health problems can lead to pain, infection, tooth loss, and difficulties with eating and speaking."
|
| 184 |
+
)
|
| 185 |
+
},
|
| 186 |
+
{
|
| 187 |
+
"id": 17,
|
| 188 |
+
"topic": "Smoking and health",
|
| 189 |
+
"text": (
|
| 190 |
+
"Smoking exposes the body to many harmful chemicals that damage the lungs, heart, and blood vessels, and it greatly increases the risk of several cancers. "
|
| 191 |
+
"People who smoke are more likely to develop chronic respiratory diseases, heart disease, stroke, and complications from infections. "
|
| 192 |
+
"Stopping smoking, even after many years, brings health benefits, such as improved breathing, circulation, and reduced risk of heart attack and some cancers over time. "
|
| 193 |
+
"Support from healthcare professionals, support groups, and smoke-free environments can make it easier for people who smoke to reduce or quit."
|
| 194 |
+
)
|
| 195 |
+
},
|
| 196 |
+
{
|
| 197 |
+
"id": 18,
|
| 198 |
+
"topic": "Alcohol and health",
|
| 199 |
+
"text": (
|
| 200 |
+
"Alcohol affects the brain, liver, heart, and many other organs, and drinking large amounts or drinking frequently can harm physical and mental health. "
|
| 201 |
+
"Heavy or risky drinking is linked to liver disease, certain cancers, high blood pressure, injuries, violence, and relationship and work problems. "
|
| 202 |
+
"Some people are more vulnerable to the effects of alcohol due to age, health conditions, pregnancy, or the medicines they take. "
|
| 203 |
+
"Reducing alcohol intake, avoiding drinking in unsafe situations, and seeking help when alcohol use feels out of control can lower the risk of harm."
|
| 204 |
+
)
|
| 205 |
+
},
|
| 206 |
+
{
|
| 207 |
+
"id": 19,
|
| 208 |
+
"topic": "Obesity and weight management",
|
| 209 |
+
"text": (
|
| 210 |
+
"Obesity refers to having excessive body fat that may affect health and is often related to an imbalance between energy taken in from food and energy used by the body. "
|
| 211 |
+
"It increases the risk of several conditions, including type 2 diabetes, hypertension, heart disease, joint problems, and some cancers. "
|
| 212 |
+
"Healthy weight management focuses on long-term habits, such as eating balanced meals, being physically active, getting enough sleep, and reducing long periods of sitting. "
|
| 213 |
+
"Small, realistic changes maintained over time tend to be more sustainable than extreme short-term diets."
|
| 214 |
+
)
|
| 215 |
+
},
|
| 216 |
+
{
|
| 217 |
+
"id": 20,
|
| 218 |
+
"topic": "Kidney health",
|
| 219 |
+
"text": (
|
| 220 |
+
"The kidneys are organs that filter waste products and excess fluid from the blood and help regulate blood pressure, mineral balance, and red blood cell production. "
|
| 221 |
+
"Long-term uncontrolled hypertension, diabetes, repeated kidney infections, and some medications or toxins can gradually damage the kidneys. "
|
| 222 |
+
"Early kidney problems often cause few or no symptoms, so regular checkups are important for people at higher risk. "
|
| 223 |
+
"Protecting kidney health includes managing chronic conditions with professional guidance, staying hydrated with safe fluids, and avoiding unnecessary use of substances that can harm the kidneys."
|
| 224 |
+
)
|
| 225 |
+
},
|
| 226 |
+
]
|
| 227 |
+
|
| 228 |
+
corpus_texts = [item["text"] for item in health_facts]
|
| 229 |
+
corpus_embeddings = embedder.encode(corpus_texts, convert_to_numpy=True)
|
| 230 |
+
|
| 231 |
+
dimension = corpus_embeddings.shape[1]
|
| 232 |
+
index = faiss.IndexFlatL2(dimension)
|
| 233 |
+
index.add(corpus_embeddings)
|
| 234 |
+
|
| 235 |
+
unsafe_keywords = [
|
| 236 |
+
"dose", "dosage", "mg", "milligram", "tablet", "capsule",
|
| 237 |
+
"prescribe", "prescription", "how many times", "self medicate",
|
| 238 |
+
"diagnose", "diagnosis"
|
| 239 |
+
]
|
| 240 |
+
|
| 241 |
+
def is_potentially_unsafe(question: str) -> bool:
|
| 242 |
+
q_lower = question.lower()
|
| 243 |
+
return any(keyword in q_lower for keyword in unsafe_keywords)
|
| 244 |
+
|
| 245 |
+
def retrieve_facts(query: str, k: int = 3):
|
| 246 |
+
query_embedding = embedder.encode([query], convert_to_numpy=True)
|
| 247 |
+
distances, indices = index.search(query_embedding, k)
|
| 248 |
+
results = []
|
| 249 |
+
for idx in indices[0]:
|
| 250 |
+
results.append(health_facts[idx]["text"])
|
| 251 |
+
return results
|
| 252 |
+
|
| 253 |
+
def generate_answer_from_context(question: str, contexts, max_tokens: int = 200) -> str:
|
| 254 |
+
context_str = "\n\n".join(contexts)
|
| 255 |
+
prompt = f"""
|
| 256 |
+
You are a healthcare information assistant. Use ONLY the information in the context below to answer the user's question in simple language.
|
| 257 |
+
|
| 258 |
+
Context:
|
| 259 |
+
{context_str}
|
| 260 |
+
|
| 261 |
+
Rules:
|
| 262 |
+
- Do not make a diagnosis.
|
| 263 |
+
- Do not give medication doses or prescriptions.
|
| 264 |
+
- Encourage the user to talk to a qualified healthcare professional for personal decisions.
|
| 265 |
+
- If the answer is not in the context, say you are not sure and ask them to speak to a professional.
|
| 266 |
+
|
| 267 |
+
Question: {question}
|
| 268 |
+
|
| 269 |
+
Answer:
|
| 270 |
+
"""
|
| 271 |
+
inputs = tokenizer(
|
| 272 |
+
prompt,
|
| 273 |
+
return_tensors="pt",
|
| 274 |
+
truncation=True,
|
| 275 |
+
max_length=1024
|
| 276 |
+
).to(DEVICE)
|
| 277 |
+
|
| 278 |
+
with torch.no_grad():
|
| 279 |
+
outputs = gen_model.generate(
|
| 280 |
+
**inputs,
|
| 281 |
+
max_new_tokens=max_tokens,
|
| 282 |
+
num_beams=4,
|
| 283 |
+
early_stopping=True
|
| 284 |
+
)
|
| 285 |
+
|
| 286 |
+
answer = tokenizer.decode(outputs[0], skip_special_tokens=True)
|
| 287 |
+
return answer.strip()
|
| 288 |
+
|
| 289 |
+
def health_qa_pipeline(question: str) -> str:
|
| 290 |
+
question = question.strip()
|
| 291 |
+
if len(question) == 0:
|
| 292 |
+
return "Please type a question."
|
| 293 |
+
|
| 294 |
+
if is_potentially_unsafe(question):
|
| 295 |
+
safe_msg = (
|
| 296 |
+
"I cannot provide medication doses, prescriptions, or make diagnoses. "
|
| 297 |
+
"Please consult a qualified healthcare professional for that. "
|
| 298 |
+
"I can help with general information only."
|
| 299 |
+
)
|
| 300 |
+
return f"{safe_msg}\n\n{DISCLAIMER}"
|
| 301 |
+
|
| 302 |
+
contexts = retrieve_facts(question, k=3)
|
| 303 |
+
answer = generate_answer_from_context(question, contexts)
|
| 304 |
+
return f"{answer}\n\n{DISCLAIMER}"
|
| 305 |
+
|
| 306 |
+
def qa_interface(question: str) -> str:
|
| 307 |
+
return health_qa_pipeline(question)
|
| 308 |
+
|
| 309 |
+
with gr.Blocks() as demo:
|
| 310 |
+
gr.Markdown("# 🧠 Health Facts Q&A Bot (Educational Only)")
|
| 311 |
+
gr.Markdown(
|
| 312 |
+
"Ask general health questions covered by the internal facts. "
|
| 313 |
+
"The bot uses retrieval augmented generation and will not give doses or diagnoses."
|
| 314 |
+
)
|
| 315 |
+
|
| 316 |
+
question_box = gr.Textbox(
|
| 317 |
+
label="Your question",
|
| 318 |
+
placeholder="e.g. How can I reduce my risk of hypertension?",
|
| 319 |
+
lines=2
|
| 320 |
+
)
|
| 321 |
+
answer_box = gr.Textbox(
|
| 322 |
+
label="Answer",
|
| 323 |
+
lines=10
|
| 324 |
+
)
|
| 325 |
+
ask_button = gr.Button("Ask")
|
| 326 |
+
|
| 327 |
+
ask_button.click(
|
| 328 |
+
qa_interface,
|
| 329 |
+
inputs=question_box,
|
| 330 |
+
outputs=answer_box,
|
| 331 |
+
)
|
| 332 |
+
|
| 333 |
+
if __name__ == "__main__":
|
| 334 |
+
demo.launch()
|