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Upload 4 files
Browse files- app.py +135 -0
- requirements.txt +11 -0
- test_access.py +1 -0
- test_load.py +28 -0
app.py
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import gradio as gr
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import dotenv
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from PIL import Image
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dotenv.load_dotenv()
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from models.loader import ModelLoader
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from models.inference import run_inference
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from reporting.tutor import generate_socratic_assessment
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# Initialize Model Loader
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loader = ModelLoader()
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# Global state to hold results between steps
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current_ai_results = {}
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def process_clinical_assessment(image):
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if image is None:
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yield image, "Please upload a Chest X-Ray image first."
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return
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yield image, "Loading Model and running CNN Inference (this may take a moment)..."
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model = loader.load_model()
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if model is None:
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yield image, "### Error\nModel failed to load. Please check console logs."
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return
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results = run_inference(model, image)
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global current_ai_results
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current_ai_results = results
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diagnosis_data = {
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"modality": "X-Ray",
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"probabilities": results["all_probabilities"]
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}
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yield image, "Generating Medical Tutor Socratic Feedack..."
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stream_generator = generate_socratic_assessment(diagnosis_data)
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for partial_text in stream_generator:
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yield image, partial_text
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def reveal_ai_analysis():
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global current_ai_results
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if not current_ai_results:
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return None, "No results yet. Please run the Clinical Assessment first.", {}
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heatmap = current_ai_results.get("heatmap_image", None)
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confidence = current_ai_results.get("confidence", 0.0)
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probs = current_ai_results.get("all_probabilities", {})
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top_diagnosis = current_ai_results.get("top_diagnosis", "Unknown")
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confidence_text = f"## Top Diagnosis: **{top_diagnosis}** ({confidence*100:.1f}%)\n\nReview the heatmap to audit for spatial mismatch."
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return heatmap, confidence_text, probs
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def log_audit(audit_status, user_notes):
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if not audit_status:
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return "Please select an Audit Status."
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return f"Audit Logged successfully!\n\nStatus: {audit_status}\nNotes: {user_notes}\n\nProceed to the next case to continue your education."
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with gr.Blocks(theme=gr.themes.Soft(), title="AI-VECINNA") as demo:
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gr.Markdown("# AI-VECINNA: Dual-Model Medical Auditing (Powered by Local MedGemma)")
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gr.Markdown("**Status: Running on NVIDIA T4 GPU (Persistent)**")
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gr.Markdown("Welcome! This system aims to train you in identifying discrepancies between AI predictions (heatmaps/probabilities) and your clinical knowledge. Remember, AI is fallible; you are the human-in-the-loop.")
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with gr.Accordion("Step 1: Clinical Assessment & Tutor", open=True):
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with gr.Row():
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with gr.Column():
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image_input = gr.Image(type="pil", label="Upload Chest X-Ray")
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analyze_btn = gr.Button("Analyze & Generate Tutor Scenario", variant="primary")
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with gr.Column():
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gr.Markdown("### MedGemma Socratic Tutor Feedback")
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scenario_output = gr.Markdown("Tutor instructions and questions will appear here after analysis.")
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gr.Markdown("### Your Human Hypothesis")
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human_hypothesis = gr.Textbox(label="Record your initial differential diagnosis here...", lines=3)
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with gr.Accordion("Step 2: AI Reveal & Audit (The Safety Standard)", open=False):
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reveal_btn = gr.Button("Reveal AI Analysis", variant="secondary")
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with gr.Row():
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with gr.Column():
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heatmap_output = gr.Image(type="pil", label="GradCAM AI Heatmap")
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with gr.Column():
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confidence_output = gr.Markdown("Confidence results will appear here.")
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probs_output = gr.Label(label="Full Probability Distribution")
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gr.Markdown("### Audit Form")
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audit_radio = gr.Radio(
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label="AI Safety Audit (Human-in-the-Loop Validation)",
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choices=[
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"AI Verified: Heatmap & Confidence clinically align.",
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"AI Flagged: Spatial mismatch (Hallucination).",
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"AI Flagged: Low confidence/over-reliance risk."
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]
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)
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audit_notes = gr.Textbox(label="Additional Audit Notes", lines=2)
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audit_btn = gr.Button("Submit Safety Audit", variant="primary")
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audit_result = gr.Textbox(label="Audit Submission Status", interactive=False)
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# Wiring with loading state
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analyze_btn.click(
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fn=lambda: gr.update(interactive=False, value="Analyzing & Generating (Streaming)..."),
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inputs=None,
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outputs=analyze_btn
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).then(
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fn=process_clinical_assessment,
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inputs=[image_input],
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outputs=[image_input, scenario_output]
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).then(
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fn=lambda: gr.update(interactive=True, value="Analyze & Generate Tutor Scenario"),
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inputs=None,
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outputs=analyze_btn
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)
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reveal_btn.click(
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fn=reveal_ai_analysis,
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inputs=[],
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outputs=[heatmap_output, confidence_output, probs_output]
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)
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audit_btn.click(
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fn=log_audit,
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inputs=[audit_radio, audit_notes],
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outputs=audit_result
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)
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if __name__ == "__main__":
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demo.launch()
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requirements.txt
ADDED
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@@ -0,0 +1,11 @@
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torch
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torchvision
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torchxrayvision
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grad-cam
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gradio
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Pillow
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numpy
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python-dotenv
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transformers
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accelerate
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huggingface_hub
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test_access.py
ADDED
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from transformers import AutoConfig; import os; from dotenv import load_dotenv; load_dotenv(); print("Testing access..."); config = AutoConfig.from_pretrained("google/medgemma-1.5-4b-it", token=os.getenv("HF_TOKEN")); print("Access Verified: ", config.model_type)
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test_load.py
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@@ -0,0 +1,28 @@
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import os
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import torch
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from transformers import AutoTokenizer, AutoModelForCausalLM
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from dotenv import load_dotenv
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load_dotenv()
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hf_token = os.getenv("HF_TOKEN")
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model_id = "google/medgemma-1.5-4b-it"
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print(f"Testing HF_TOKEN: {hf_token[:5]}...{hf_token[-5:] if hf_token else 'None'}")
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print(f"Model ID: {model_id}")
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try:
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print("Attempting to load tokenizer...")
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tokenizer = AutoTokenizer.from_pretrained(model_id, token=hf_token)
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print("Tokenizer loaded successfully.")
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print("Attempting to load model config (not weights yet)...")
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model = AutoModelForCausalLM.from_pretrained(
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model_id,
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token=hf_token,
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torch_dtype=torch.bfloat16,
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device_map="cpu",
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low_cpu_mem_usage=True
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)
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print("Model loaded successfully.")
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except Exception as e:
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print(f"DIAGNOSTIC FAILURE: {e}")
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