Update app.py
Browse files
app.py
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from fastapi import FastAPI, HTTPException, Request
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from pydantic import BaseModel
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from typing import List, Optional, Dict
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import gradio as gr
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import json
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from enum import Enum
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import re
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import os
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import
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import
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from
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# Configuration variables that can be set through environment variables
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# These allow for flexible deployment configuration without code changes
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MODEL_REPO_ID = os.getenv("MODEL_REPO_ID", "mradermacher/Llama3-Med42-8B-GGUF")
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MODEL_FILENAME = os.getenv("MODEL_FILENAME", "Llama3-Med42-8B.Q5_K_M.gguf")
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N_THREADS = int(os.getenv("N_THREADS", "4"))
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# Data models for API request/response handling
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class ConsultationState(Enum):
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INITIAL = "initial"
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GATHERING_INFO = "gathering_info"
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DIAGNOSIS = "diagnosis"
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class Message(BaseModel):
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role: str
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content: str
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class ChatRequest(BaseModel):
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messages: List[Message]
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class ChatResponse(BaseModel):
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response: str
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finished: bool
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# Standardized health assessment questions for consistent patient evaluation
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HEALTH_ASSESSMENT_QUESTIONS = [
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"What are your current symptoms and how long have you been experiencing them?",
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"Do you have any pre-existing medical conditions or chronic illnesses?",
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"Are you currently taking any medications? If yes, please list them.",
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"Is there any relevant family medical history I should know about?",
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"Have you had any similar symptoms in the past? If yes, what treatments worked?"
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]
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#
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professional, and thorough in your assessments. When asked about your identity, explain that you are
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Nurse Oge, a medical AI assistant serving Nigerian communities. Remember that you must gather complete
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health information before providing any medical advice.
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"""
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class
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"""
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Main assistant class that handles conversation management and medical consultations
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"""
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def __init__(self):
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try:
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def _is_location_question(self, message: str) -> bool:
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"""Detect if the user is asking about the assistant's location"""
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location_patterns = [
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r"where are you",
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r"which country",
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r"your location",
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r"where do you work",
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r"where are you based"
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]
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return any(re.search(pattern, message.lower()) for pattern in location_patterns)
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def _get_next_assessment_question(self, conversation_id: str) -> Optional[str]:
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"""Get the next health assessment question based on conversation progress"""
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if conversation_id not in self.gathered_info:
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self.gathered_info[conversation_id] = []
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questions_asked = len(self.gathered_info[conversation_id])
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if questions_asked < len(HEALTH_ASSESSMENT_QUESTIONS):
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return HEALTH_ASSESSMENT_QUESTIONS[questions_asked]
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return None
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"""
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Process incoming messages and manage the conversation flow
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"""
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try:
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#
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f"{next_question}",
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finished=False
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)
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#
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if next_question:
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return ChatResponse(
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response=f"Thank you for that information. {next_question}",
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finished=False
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)
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else:
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self.consultation_states[conversation_id] = ConsultationState.DIAGNOSIS
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# Prepare context from gathered information
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context = "\n".join([
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f"Q: {q}\nA: {a}" for q, a in
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zip(HEALTH_ASSESSMENT_QUESTIONS, self.gathered_info[conversation_id])
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])
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# Prepare messages for the model
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messages = [
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{"role": "system", "content": NURSE_OGE_IDENTITY},
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{"role": "user", "content": f"Based on the following patient information, provide thorough assessment, diagnosis and recommendations:\n\n{context}\n\nOriginal query: {message}"}
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]
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# Implement retry logic for model inference
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max_retries = 3
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retry_delay = 2
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for attempt in range(max_retries):
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try:
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response = self.llm.create_chat_completion(
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messages=messages,
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max_tokens=512,
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temperature=0.7,
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top_p=0.95,
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stop=["</s>"]
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)
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break
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except Exception as e:
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if attempt < max_retries - 1:
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time.sleep(retry_delay)
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continue
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return ChatResponse(
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response="I'm sorry, I'm experiencing some technical difficulties. Please try again in a moment.",
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finished=True
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)
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# Reset conversation state
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self.consultation_states[conversation_id] = ConsultationState.INITIAL
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self.gathered_info[conversation_id] = []
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return ChatResponse(
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response=response['choices'][0]['message']['content'],
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finished=True
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)
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except Exception as e:
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return ChatResponse(
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response=f"An error occurred while processing your request. Please try again.",
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finished=True
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)
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# Initialize on startup
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global nurse_oge
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try:
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except Exception as e:
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# Clean up on shutdown if needed
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# Add cleanup code here
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# Add memory management middleware
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@app.middleware("http")
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async def add_memory_management(request: Request, call_next):
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"""Middleware to help manage memory usage"""
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gc.collect()
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response = await call_next(request)
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gc.collect()
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return response
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# Health check endpoint
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@app.get("/health")
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async def health_check():
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"""Endpoint to verify service health"""
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return {"status": "healthy", "model_loaded": nurse_oge is not None}
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# Chat endpoint
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@app.post("/chat")
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async def chat_endpoint(request: ChatRequest):
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"""Main chat endpoint for API interactions"""
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if nurse_oge is None:
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raise HTTPException(
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status_code=503,
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detail="The medical assistant is not available at the moment. Please try again later."
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)
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if
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history=request.messages[:-1]
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)
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return response
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# Gradio chat interface function
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async def gradio_chat(message, history):
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"""Handler for Gradio chat interface"""
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if nurse_oge is None:
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return "The medical assistant is not available at the moment. Please try again later."
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response = await nurse_oge.process_message("gradio_user", message, history)
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return response.response
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# Create
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demo = gr.ChatInterface(
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fn=
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title="
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description="""
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examples=[
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],
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)
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)
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#
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demo.css = """
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.gradio-container {
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font-family: 'Arial', sans-serif;
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}
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.chat-message {
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padding: 1rem;
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border-radius: 0.5rem;
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margin-bottom: 0.5rem;
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}
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"""
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# Mount both FastAPI and Gradio
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app = gr.mount_gradio_app(app, demo, path="/gradio")
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# Run the application
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if __name__ == "__main__":
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uvicorn.run(app, host="0.0.0.0", port=8000)
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import os
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import gradio as gr
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from transformers import AutoModelForCausalLM, AutoTokenizer
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import torch
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from typing import List, Dict
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import logging
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# Set up logging to help us debug model loading and inference
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logging.basicConfig(level=logging.INFO)
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logger = logging.getLogger(__name__)
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class MedicalAssistant:
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def __init__(self):
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"""Initialize the medical assistant with model and tokenizer"""
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try:
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logger.info("Starting model initialization...")
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# Model configuration - adjust these based on your available compute
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self.model_name = "mradermacher/Llama3-Med42-8B-GGUF"
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self.max_length = 1048
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self.device = "cuda" if torch.cuda.is_available() else "cpu"
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logger.info(f"Using device: {self.device}")
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# Load tokenizer first - this is typically faster and can catch issues early
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logger.info("Loading tokenizer...")
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self.tokenizer = AutoTokenizer.from_pretrained(
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self.model_name,
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padding_side="left",
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trust_remote_code=True
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# Set padding token if not set
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if self.tokenizer.pad_token is None:
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self.tokenizer.pad_token = self.tokenizer.eos_token
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# Load model with memory optimizations
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logger.info("Loading model...")
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self.model = AutoModelForCausalLM.from_pretrained(
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self.model_name,
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torch_dtype=torch.float16,
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device_map="auto",
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load_in_8bit=True,
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trust_remote_code=True
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)
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logger.info("Model initialization completed successfully!")
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except Exception as e:
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logger.error(f"Error during initialization: {str(e)}")
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raise
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def generate_response(self, message: str, chat_history: List[Dict] = None) -> str:
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"""Generate a response to the user's message"""
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try:
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# Prepare the prompt
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system_prompt = """You are a medical AI assistant. Respond to medical queries
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professionally and accurately. If you're unsure, always recommend consulting
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with a healthcare provider."""
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# Combine system prompt, chat history, and current message
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full_prompt = f"{system_prompt}\n\nUser: {message}\nAssistant:"
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# Tokenize input
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inputs = self.tokenizer(
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full_prompt,
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return_tensors="pt",
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padding=True,
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truncation=True,
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max_length=self.max_length
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).to(self.device)
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# Generate response
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with torch.no_grad():
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outputs = self.model.generate(
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**inputs,
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max_new_tokens=512,
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do_sample=True,
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temperature=0.7,
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top_p=0.95,
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pad_token_id=self.tokenizer.pad_token_id,
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repetition_penalty=1.1
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# Decode and clean up response
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response = self.tokenizer.decode(
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outputs[0],
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skip_special_tokens=True
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| 89 |
)
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| 90 |
+
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| 91 |
+
# Extract just the assistant's response
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| 92 |
+
response = response.split("Assistant:")[-1].strip()
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| 93 |
+
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| 94 |
+
return response
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| 95 |
+
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| 96 |
+
except Exception as e:
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| 97 |
+
logger.error(f"Error during response generation: {str(e)}")
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| 98 |
+
return f"I apologize, but I encountered an error. Please try again."
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| 99 |
+
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| 100 |
+
# Initialize the assistant
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| 101 |
+
assistant = None
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| 102 |
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| 103 |
+
def initialize_assistant():
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| 104 |
+
"""Initialize the assistant and handle any errors"""
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| 105 |
+
global assistant
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| 106 |
try:
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| 107 |
+
assistant = MedicalAssistant()
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| 108 |
+
return True
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| 109 |
except Exception as e:
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| 110 |
+
logger.error(f"Failed to initialize assistant: {str(e)}")
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| 111 |
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return False
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| 113 |
+
def chat_response(message: str, history: List[Dict]):
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| 114 |
+
"""Handle chat messages and return responses"""
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| 115 |
+
global assistant
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| 116 |
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| 117 |
+
# Check if assistant is initialized
|
| 118 |
+
if assistant is None:
|
| 119 |
+
if not initialize_assistant():
|
| 120 |
+
return "I apologize, but I'm currently unavailable. Please try again later."
|
| 121 |
|
| 122 |
+
try:
|
| 123 |
+
return assistant.generate_response(message, history)
|
| 124 |
+
except Exception as e:
|
| 125 |
+
logger.error(f"Error in chat response: {str(e)}")
|
| 126 |
+
return "I encountered an error. Please try again."
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|
| 127 |
|
| 128 |
+
# Create Gradio interface
|
| 129 |
demo = gr.ChatInterface(
|
| 130 |
+
fn=chat_response,
|
| 131 |
+
title="Medical Assistant (Test Version)",
|
| 132 |
+
description="""This is a test version of the medical assistant.
|
| 133 |
+
Please use it to verify basic functionality.""",
|
| 134 |
examples=[
|
| 135 |
+
"What are the symptoms of malaria?",
|
| 136 |
+
"How can I prevent type 2 diabetes?",
|
| 137 |
+
"What should I do for a mild headache?"
|
| 138 |
],
|
| 139 |
+
# retry_btn=None,
|
| 140 |
+
# undo_btn=None,
|
| 141 |
+
# clear_btn="Clear"
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|
| 142 |
)
|
| 143 |
|
| 144 |
+
# Launch the interface
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|
| 145 |
if __name__ == "__main__":
|
| 146 |
+
demo.launch()
|
|
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