logbook.json

{
  "schema_version": 1,
  "title": "Repro - Protein Fold Classification at Scale: Benchmarking and Pretraining",
  "emoji": "\ud83d\udd2c",
  "space_id": "bertfil/jPKqiaPTEd",
  "paper": {
    "arxiv_id": "2605.18552",
    "openreview_id": "jPKqiaPTEd",
    "title": "Protein Fold Classification at Scale: Benchmarking and Pretraining",
    "url": "https://arxiv.org/abs/2605.18552"
  },
  "tags": [
    "icml2026-repro",
    "paper-jPKqiaPTEd"
  ],
  "updated_at": "2026-07-20T03:52:38+00:00",
  "root": {
    "slug": "index",
    "title": "Repro - Protein Fold Classification at Scale: Benchmarking and Pretraining",
    "file": "pages/index.md",
    "children": [
      {
        "slug": "00-scored-evidence-summary",
        "title": "00 - Scored evidence summary",
        "file": "pages/00-scored-evidence-summary/page.md",
        "children": []
      },
      {
        "slug": "claim-1-tedbench-is-a-large-scale-non-redundant-protein-fo",
        "title": "Claim 1 - TEDBench is a large-scale non-redundant protein fold classif\u2026",
        "file": "pages/claim-1-tedbench-is-a-large-scale-non-redundant-protein-fo/page.md",
        "children": []
      },
      {
        "slug": "claim-2-masked-invariant-autoencoders-mask-a-high-ratio-of",
        "title": "Claim 2 - Masked Invariant Autoencoders mask a high ratio of backbone \u2026",
        "file": "pages/claim-2-masked-invariant-autoencoders-mask-a-high-ratio-of/page.md",
        "children": []
      },
      {
        "slug": "claim-3-miae-benchmark-results-on-tedbench-outperform-or-c",
        "title": "Claim 3 - MiAE benchmark results on TEDBench outperform or compete wit\u2026",
        "file": "pages/claim-3-miae-benchmark-results-on-tedbench-outperform-or-c/page.md",
        "children": []
      },
      {
        "slug": "claim-4-linear-probing-results-isolate-miae-representation",
        "title": "Claim 4 - Linear probing results isolate MiAE representation quality a\u2026",
        "file": "pages/claim-4-linear-probing-results-isolate-miae-representation/page.md",
        "children": []
      },
      {
        "slug": "claim-5-ablations-show-high-masking-ratios-decoder-design",
        "title": "Claim 5 - Ablations show high masking ratios, decoder design, reconstr\u2026",
        "file": "pages/claim-5-ablations-show-high-masking-ratios-decoder-design/page.md",
        "children": []
      },
      {
        "slug": "reproduction-protocol-and-provenance",
        "title": "Reproduction protocol and provenance",
        "file": "pages/reproduction-protocol-and-provenance/page.md",
        "children": []
      },
      {
        "slug": "conclusion",
        "title": "Conclusion",
        "file": "pages/conclusion/page.md",
        "children": []
      }
    ]
  },
  "agent_view_tokens": 10797,
  "revision": "1784519558416771900"
}