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Browse files- README.md +3 -3
- app.py +800 -0
- packages.txt +4 -0
- requirements.txt +23 -0
README.md
CHANGED
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@@ -1,8 +1,8 @@
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---
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title: TRIBE V2 Neural Activity Predictor
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-
emoji:
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-
colorFrom:
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colorTo:
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sdk: gradio
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sdk_version: 6.10.0
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python_version: '3.12'
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---
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title: TRIBE V2 Neural Activity Predictor
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+
emoji: π₯
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+
colorFrom: indigo
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+
colorTo: pink
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sdk: gradio
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sdk_version: 6.10.0
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python_version: '3.12'
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app.py
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@@ -0,0 +1,800 @@
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+
"""
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| 2 |
+
TRIBE v2 β Brain Encoding Demo
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| 3 |
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HuggingFace Spaces Β· ZeroGPU
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"""
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import os
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os.environ["HF_HUB_ENABLE_HF_TRANSFER"] = "0"
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os.environ["PYVISTA_OFF_SCREEN"] = "true"
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os.environ["DISPLAY"] = ""
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os.environ["VTK_DEFAULT_RENDER_WINDOW_OFFSCREEN"] = "true"
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import tempfile
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from pathlib import Path
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import numpy as np
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import matplotlib
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matplotlib.use("Agg")
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import gradio as gr
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import spaces
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# ββ Constants ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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+
CACHE_FOLDER = Path("./cache")
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| 25 |
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CACHE_FOLDER.mkdir(parents=True, exist_ok=True)
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| 27 |
+
SAMPLE_VIDEO_URL = "https://download.blender.org/durian/trailer/sintel_trailer-480p.mp4"
|
| 28 |
+
|
| 29 |
+
FIRE_COLORSCALE = [
|
| 30 |
+
[0.00, "rgb(0,0,0)"],
|
| 31 |
+
[0.15, "rgb(30,0,20)"],
|
| 32 |
+
[0.30, "rgb(120,10,5)"],
|
| 33 |
+
[0.50, "rgb(200,50,0)"],
|
| 34 |
+
[0.65, "rgb(240,120,0)"],
|
| 35 |
+
[0.80, "rgb(255,200,20)"],
|
| 36 |
+
[1.00, "rgb(255,255,220)"],
|
| 37 |
+
]
|
| 38 |
+
|
| 39 |
+
# ββ HTML blocks ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 40 |
+
HEADER = """
|
| 41 |
+
<div id="tribe-header">
|
| 42 |
+
<div class="tribe-wordmark">TRIBE v2</div>
|
| 43 |
+
<p class="tribe-subtitle">
|
| 44 |
+
A Foundation Model of Vision, Audition & Language for In-Silico Neuroscience
|
| 45 |
+
</p>
|
| 46 |
+
<div class="tribe-links">
|
| 47 |
+
<a href="https://huggingface.co/facebook/tribev2" target="_blank">Weights</a>
|
| 48 |
+
<span class="sep">Β·</span>
|
| 49 |
+
<a href="https://ai.meta.com/research/publications/a-foundation-model-of-vision-audition-and-language-for-in-silico-neuroscience/" target="_blank">Paper</a>
|
| 50 |
+
<span class="sep">Β·</span>
|
| 51 |
+
<a href="https://github.com/facebookresearch/tribev2" target="_blank">Code</a>
|
| 52 |
+
<span class="sep">Β·</span>
|
| 53 |
+
<a href="https://aidemos.atmeta.com/tribev2/" target="_blank">Official Demo</a>
|
| 54 |
+
</div>
|
| 55 |
+
</div>
|
| 56 |
+
"""
|
| 57 |
+
|
| 58 |
+
NOTICE = """
|
| 59 |
+
<div class="tribe-notice">
|
| 60 |
+
<span class="notice-label">Note</span>
|
| 61 |
+
This demo runs on ZeroGPU (shared H200). Processing video and audio inputs
|
| 62 |
+
involves downloading WhisperX on first run and may take 2β4 minutes.
|
| 63 |
+
Subsequent runs within the same session are significantly faster.
|
| 64 |
+
</div>
|
| 65 |
+
"""
|
| 66 |
+
|
| 67 |
+
MODEL_INFO = """
|
| 68 |
+
<div class="info-grid">
|
| 69 |
+
<div class="info-item">
|
| 70 |
+
<div class="info-key">Architecture</div>
|
| 71 |
+
<div class="info-val">Transformer encoder mapping multimodal features to cortical surface activity</div>
|
| 72 |
+
</div>
|
| 73 |
+
<div class="info-item">
|
| 74 |
+
<div class="info-key">Encoders</div>
|
| 75 |
+
<div class="info-val">V-JEPA2 (video) Β· Wav2Vec-BERT 2.0 (audio) Β· LLaMA 3.2-3B (text)</div>
|
| 76 |
+
</div>
|
| 77 |
+
<div class="info-item">
|
| 78 |
+
<div class="info-key">Preprocessing</div>
|
| 79 |
+
<div class="info-val">WhisperX extracts word-level timestamps from audio/video, enabling the text encoder to process speech with precise timing</div>
|
| 80 |
+
</div>
|
| 81 |
+
<div class="info-item">
|
| 82 |
+
<div class="info-key">Output</div>
|
| 83 |
+
<div class="info-val">Predicted fMRI BOLD responses on the fsaverage5 cortical mesh β 20,484 vertices, 1 TR = 1 s</div>
|
| 84 |
+
</div>
|
| 85 |
+
<div class="info-item">
|
| 86 |
+
<div class="info-key">Training data</div>
|
| 87 |
+
<div class="info-val">700+ healthy subjects exposed to images, podcasts, videos, and text (naturalistic paradigm)</div>
|
| 88 |
+
</div>
|
| 89 |
+
<div class="info-item">
|
| 90 |
+
<div class="info-key">License</div>
|
| 91 |
+
<div class="info-val">CC BY-NC 4.0 β research and non-commercial use only</div>
|
| 92 |
+
</div>
|
| 93 |
+
</div>
|
| 94 |
+
"""
|
| 95 |
+
|
| 96 |
+
NOTES_HTML = """
|
| 97 |
+
<div class="tribe-footer">
|
| 98 |
+
<span class="footer-label">Usage notes</span>
|
| 99 |
+
<ul>
|
| 100 |
+
<li>The 3D brain view is interactive: drag to rotate, scroll to zoom, use the slider to navigate timesteps.</li>
|
| 101 |
+
<li>The text encoder requires access to the gated <strong>LLaMA 3.2-3B</strong> model on Hugging Face. Text input may fail if access is not granted.</li>
|
| 102 |
+
<li>ZeroGPU sessions are ephemeral. If the Space goes idle, the next request re-initialises the model (~30 s).</li>
|
| 103 |
+
<li>This is an unofficial community demo. For the official interactive visualisation, see <a href="https://aidemos.atmeta.com/tribev2/" target="_blank">aidemos.atmeta.com/tribev2</a>.</li>
|
| 104 |
+
</ul>
|
| 105 |
+
</div>
|
| 106 |
+
"""
|
| 107 |
+
|
| 108 |
+
# ββ Singletons βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 109 |
+
_model = None
|
| 110 |
+
_plotter = None
|
| 111 |
+
_mesh_cache = None
|
| 112 |
+
|
| 113 |
+
|
| 114 |
+
def _load_model():
|
| 115 |
+
global _model, _plotter
|
| 116 |
+
if _model is None:
|
| 117 |
+
from tribev2.demo_utils import TribeModel
|
| 118 |
+
from tribev2.plotting import PlotBrain
|
| 119 |
+
|
| 120 |
+
hf_token = os.environ.get("HF_TOKEN")
|
| 121 |
+
if hf_token:
|
| 122 |
+
from huggingface_hub import login
|
| 123 |
+
login(token=hf_token, add_to_git_credential=False)
|
| 124 |
+
|
| 125 |
+
_model = TribeModel.from_pretrained("facebook/tribev2", cache_folder=CACHE_FOLDER)
|
| 126 |
+
_plotter = PlotBrain(mesh="fsaverage5")
|
| 127 |
+
return _model, _plotter
|
| 128 |
+
|
| 129 |
+
|
| 130 |
+
def _load_mesh():
|
| 131 |
+
global _mesh_cache
|
| 132 |
+
if _mesh_cache is None:
|
| 133 |
+
from nilearn import datasets, surface
|
| 134 |
+
fsaverage = datasets.fetch_surf_fsaverage("fsaverage5")
|
| 135 |
+
coords_L, faces_L = surface.load_surf_mesh(fsaverage.pial_left)
|
| 136 |
+
coords_R, faces_R = surface.load_surf_mesh(fsaverage.pial_right)
|
| 137 |
+
_mesh_cache = (
|
| 138 |
+
np.array(coords_L), np.array(faces_L),
|
| 139 |
+
np.array(coords_R), np.array(faces_R),
|
| 140 |
+
)
|
| 141 |
+
return _mesh_cache
|
| 142 |
+
|
| 143 |
+
|
| 144 |
+
# ββ 3-D brain builder ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 145 |
+
def build_3d_figure(preds: np.ndarray, vmin_val: float = 0.5) -> str:
|
| 146 |
+
"""Return an HTML iframe with interactive 3-D brain β white base,
|
| 147 |
+
fire activation overlay, centered slider."""
|
| 148 |
+
import plotly.graph_objects as go
|
| 149 |
+
import json
|
| 150 |
+
import html as _html
|
| 151 |
+
|
| 152 |
+
coords_L, faces_L, coords_R, faces_R = _load_mesh()
|
| 153 |
+
n_verts_L = coords_L.shape[0]
|
| 154 |
+
n_t = preds.shape[0]
|
| 155 |
+
|
| 156 |
+
# Normalization: same threshold as the timeline slider
|
| 157 |
+
vmax = np.percentile(preds, 99)
|
| 158 |
+
vmin = vmin_val
|
| 159 |
+
|
| 160 |
+
BG = "#1a1a2e"
|
| 161 |
+
MONO = "ui-monospace, 'Cascadia Code', 'Source Code Pro', monospace"
|
| 162 |
+
|
| 163 |
+
# White base colorscale: 0βwhite, fire only above threshold
|
| 164 |
+
WHITE_FIRE = [
|
| 165 |
+
[0.00, "rgb(245,245,245)"],
|
| 166 |
+
[0.25, "rgb(220,180,160)"],
|
| 167 |
+
[0.45, "rgb(200,60,10)"],
|
| 168 |
+
[0.65, "rgb(240,120,0)"],
|
| 169 |
+
[0.80, "rgb(255,200,20)"],
|
| 170 |
+
[1.00, "rgb(255,255,220)"],
|
| 171 |
+
]
|
| 172 |
+
|
| 173 |
+
mesh_kw = dict(
|
| 174 |
+
colorscale=WHITE_FIRE, cmin=0, cmax=1, showscale=False,
|
| 175 |
+
flatshading=False, hoverinfo="skip",
|
| 176 |
+
lighting=dict(ambient=0.60, diffuse=0.85, specular=0.25, roughness=0.45),
|
| 177 |
+
lightposition=dict(x=80, y=180, z=200),
|
| 178 |
+
)
|
| 179 |
+
|
| 180 |
+
def _vals(t):
|
| 181 |
+
v = preds[t]
|
| 182 |
+
return np.clip((v - vmin) / max(vmax - vmin, 1e-8), 0, 1)
|
| 183 |
+
|
| 184 |
+
def _traces(t):
|
| 185 |
+
vn = _vals(t)
|
| 186 |
+
offset = 8.0
|
| 187 |
+
tL = go.Mesh3d(
|
| 188 |
+
x=coords_L[:, 0] - offset, y=coords_L[:, 1], z=coords_L[:, 2],
|
| 189 |
+
i=faces_L[:, 0], j=faces_L[:, 1], k=faces_L[:, 2],
|
| 190 |
+
intensity=vn[:n_verts_L], name="Left", **mesh_kw)
|
| 191 |
+
tR = go.Mesh3d(
|
| 192 |
+
x=coords_R[:, 0] + offset, y=coords_R[:, 1], z=coords_R[:, 2],
|
| 193 |
+
i=faces_R[:, 0], j=faces_R[:, 1], k=faces_R[:, 2],
|
| 194 |
+
intensity=vn[n_verts_L:], name="Right", **mesh_kw)
|
| 195 |
+
return tL, tR
|
| 196 |
+
|
| 197 |
+
def _intensity_only(t):
|
| 198 |
+
vn = _vals(t)
|
| 199 |
+
return [go.Mesh3d(intensity=vn[:n_verts_L]),
|
| 200 |
+
go.Mesh3d(intensity=vn[n_verts_L:])]
|
| 201 |
+
|
| 202 |
+
tL0, tR0 = _traces(0)
|
| 203 |
+
frames = [
|
| 204 |
+
go.Frame(data=_intensity_only(t), name=str(t),
|
| 205 |
+
layout=go.Layout(title_text=f"t = {t} s"))
|
| 206 |
+
for t in range(n_t)
|
| 207 |
+
]
|
| 208 |
+
|
| 209 |
+
slider_steps = [
|
| 210 |
+
dict(args=[[str(t)], dict(frame=dict(duration=0, redraw=True),
|
| 211 |
+
mode="immediate", transition=dict(duration=0))],
|
| 212 |
+
label=str(t), method="animate")
|
| 213 |
+
for t in range(n_t)
|
| 214 |
+
]
|
| 215 |
+
|
| 216 |
+
fig = go.Figure(
|
| 217 |
+
data=[tL0, tR0],
|
| 218 |
+
frames=frames,
|
| 219 |
+
layout=go.Layout(
|
| 220 |
+
height=500,
|
| 221 |
+
paper_bgcolor=BG,
|
| 222 |
+
plot_bgcolor=BG,
|
| 223 |
+
scene=dict(
|
| 224 |
+
bgcolor=BG,
|
| 225 |
+
xaxis=dict(visible=False),
|
| 226 |
+
yaxis=dict(visible=False),
|
| 227 |
+
zaxis=dict(visible=False),
|
| 228 |
+
camera=dict(
|
| 229 |
+
eye=dict(x=0, y=-1.9, z=0.4),
|
| 230 |
+
up=dict(x=0, y=0, z=1),
|
| 231 |
+
),
|
| 232 |
+
aspectmode="data",
|
| 233 |
+
),
|
| 234 |
+
margin=dict(l=0, r=0, t=8, b=70),
|
| 235 |
+
title=dict(
|
| 236 |
+
text="t = 0 s β drag to rotate Β· scroll to zoom",
|
| 237 |
+
font=dict(color="#9ca3af", family=MONO, size=11),
|
| 238 |
+
x=0.5,
|
| 239 |
+
),
|
| 240 |
+
updatemenus=[],
|
| 241 |
+
sliders=[dict(
|
| 242 |
+
active=0, steps=slider_steps,
|
| 243 |
+
currentvalue=dict(
|
| 244 |
+
prefix="t = ", suffix=" s",
|
| 245 |
+
font=dict(color="#9ca3af", family=MONO, size=11),
|
| 246 |
+
visible=True, xanchor="center",
|
| 247 |
+
),
|
| 248 |
+
pad=dict(b=8, t=8),
|
| 249 |
+
len=0.85, x=0.5, xanchor="center", y=0,
|
| 250 |
+
bgcolor="#111827", bordercolor="#1f2937",
|
| 251 |
+
tickcolor="#374151",
|
| 252 |
+
font=dict(color="#6b7280", family=MONO, size=10),
|
| 253 |
+
)],
|
| 254 |
+
),
|
| 255 |
+
)
|
| 256 |
+
|
| 257 |
+
inner_html = fig.to_html(
|
| 258 |
+
include_plotlyjs=True,
|
| 259 |
+
full_html=True,
|
| 260 |
+
config={"responsive": True, "displayModeBar": False},
|
| 261 |
+
)
|
| 262 |
+
srcdoc = _html.escape(inner_html, quote=True)
|
| 263 |
+
return (
|
| 264 |
+
f'<iframe srcdoc="{srcdoc}" '
|
| 265 |
+
f'style="width:100%;height:520px;border:none;background:{BG};" '
|
| 266 |
+
f'scrolling="no"></iframe>'
|
| 267 |
+
)
|
| 268 |
+
|
| 269 |
+
|
| 270 |
+
# ββ Core inference βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 271 |
+
@spaces.GPU(duration=300)
|
| 272 |
+
def run_prediction(input_type, video_file, audio_file, text_input, n_timesteps, vmin_val, show_stimuli):
|
| 273 |
+
model, plotter = _load_model()
|
| 274 |
+
|
| 275 |
+
if input_type == "Video" and video_file is not None:
|
| 276 |
+
df = model.get_events_dataframe(video_path=video_file)
|
| 277 |
+
stimuli = show_stimuli
|
| 278 |
+
elif input_type == "Audio" and audio_file is not None:
|
| 279 |
+
df = model.get_events_dataframe(audio_path=audio_file)
|
| 280 |
+
stimuli = False
|
| 281 |
+
elif input_type == "Text" and text_input.strip():
|
| 282 |
+
with tempfile.NamedTemporaryFile(mode="w", suffix=".txt", delete=False, encoding="utf-8") as tmp:
|
| 283 |
+
tmp.write(text_input.strip())
|
| 284 |
+
fpath = tmp.name
|
| 285 |
+
try:
|
| 286 |
+
df = model.get_events_dataframe(text_path=fpath)
|
| 287 |
+
finally:
|
| 288 |
+
os.unlink(fpath)
|
| 289 |
+
stimuli = False
|
| 290 |
+
else:
|
| 291 |
+
raise gr.Error("Please provide an input for the selected modality.")
|
| 292 |
+
|
| 293 |
+
# ZeroGPU runs in a daemon process β DataLoader cannot spawn children.
|
| 294 |
+
import torch.utils.data
|
| 295 |
+
_orig = torch.utils.data.DataLoader.__init__
|
| 296 |
+
def _patched(self, *a, **kw):
|
| 297 |
+
kw["num_workers"] = 0
|
| 298 |
+
_orig(self, *a, **kw)
|
| 299 |
+
torch.utils.data.DataLoader.__init__ = _patched
|
| 300 |
+
try:
|
| 301 |
+
preds, segments = model.predict(events=df)
|
| 302 |
+
finally:
|
| 303 |
+
torch.utils.data.DataLoader.__init__ = _orig
|
| 304 |
+
|
| 305 |
+
n = min(int(n_timesteps), len(preds))
|
| 306 |
+
if n == 0:
|
| 307 |
+
raise gr.Error("Model returned no predictions for this input.")
|
| 308 |
+
|
| 309 |
+
preds_n = preds[:n]
|
| 310 |
+
|
| 311 |
+
timeline_fig = plotter.plot_timesteps(
|
| 312 |
+
preds_n, segments=segments[:n],
|
| 313 |
+
cmap="fire", norm_percentile=99, vmin=vmin_val,
|
| 314 |
+
alpha_cmap=(0.0, 0.2), show_stimuli=stimuli,
|
| 315 |
+
)
|
| 316 |
+
timeline_fig.set_dpi(180)
|
| 317 |
+
brain_3d_html = build_3d_figure(preds_n, vmin_val=vmin_val)
|
| 318 |
+
|
| 319 |
+
status = (
|
| 320 |
+
f"{preds.shape[0]} timesteps Γ {preds.shape[1]:,} vertices "
|
| 321 |
+
f"(fsaverage5) β showing first {n}"
|
| 322 |
+
)
|
| 323 |
+
return brain_3d_html, timeline_fig, status
|
| 324 |
+
|
| 325 |
+
|
| 326 |
+
def download_sample_video():
|
| 327 |
+
from tribev2.demo_utils import download_file
|
| 328 |
+
dest = CACHE_FOLDER / "sintel_trailer.mp4"
|
| 329 |
+
download_file(SAMPLE_VIDEO_URL, dest)
|
| 330 |
+
return str(dest)
|
| 331 |
+
|
| 332 |
+
|
| 333 |
+
# ββ CSS ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 334 |
+
CSS = """
|
| 335 |
+
@import url('https://fonts.googleapis.com/css2?family=Inter:wght@300;400;500;600&display=swap');
|
| 336 |
+
|
| 337 |
+
*, *::before, *::after { box-sizing: border-box; }
|
| 338 |
+
|
| 339 |
+
body, .gradio-container {
|
| 340 |
+
background: #0b0e17 !important;
|
| 341 |
+
color: #c9d4e8 !important;
|
| 342 |
+
font-family: 'Inter', system-ui, sans-serif !important;
|
| 343 |
+
}
|
| 344 |
+
.gradio-container {
|
| 345 |
+
max-width: 100% !important;
|
| 346 |
+
width: 100% !important;
|
| 347 |
+
margin: 0 !important;
|
| 348 |
+
padding: 0 28px 56px !important;
|
| 349 |
+
}
|
| 350 |
+
|
| 351 |
+
/* ββ Header ββ */
|
| 352 |
+
#tribe-header {
|
| 353 |
+
padding: 36px 0 22px;
|
| 354 |
+
text-align: center;
|
| 355 |
+
border-bottom: 1px solid #1a2235;
|
| 356 |
+
}
|
| 357 |
+
.tribe-wordmark {
|
| 358 |
+
font-size: 2.4rem;
|
| 359 |
+
font-weight: 600;
|
| 360 |
+
letter-spacing: -0.03em;
|
| 361 |
+
color: #edf2ff;
|
| 362 |
+
line-height: 1;
|
| 363 |
+
margin-bottom: 10px;
|
| 364 |
+
}
|
| 365 |
+
.tribe-subtitle {
|
| 366 |
+
font-size: 0.87rem;
|
| 367 |
+
color: #5a6a88;
|
| 368 |
+
margin: 0 0 12px;
|
| 369 |
+
line-height: 1.6;
|
| 370 |
+
}
|
| 371 |
+
.tribe-links { font-size: 0.76rem; }
|
| 372 |
+
.tribe-links a { color: #5a7aaa; text-decoration: none; transition: color 0.15s; }
|
| 373 |
+
.tribe-links a:hover { color: #a0b8d8; }
|
| 374 |
+
.tribe-links .sep { margin: 0 8px; color: #1e2a3a; }
|
| 375 |
+
|
| 376 |
+
/* ββ Notice ββ */
|
| 377 |
+
.tribe-notice {
|
| 378 |
+
background: #0d1120;
|
| 379 |
+
border: 1px solid #1a2235;
|
| 380 |
+
border-left: 3px solid #1b4f8a;
|
| 381 |
+
border-radius: 4px;
|
| 382 |
+
padding: 11px 16px;
|
| 383 |
+
font-size: 0.79rem;
|
| 384 |
+
color: #5a7aaa;
|
| 385 |
+
line-height: 1.6;
|
| 386 |
+
margin: 16px 0 0;
|
| 387 |
+
}
|
| 388 |
+
.notice-label {
|
| 389 |
+
font-weight: 600;
|
| 390 |
+
color: #4a9fd4;
|
| 391 |
+
margin-right: 8px;
|
| 392 |
+
text-transform: uppercase;
|
| 393 |
+
font-size: 0.66rem;
|
| 394 |
+
letter-spacing: 0.1em;
|
| 395 |
+
}
|
| 396 |
+
|
| 397 |
+
/* ββ Panel box β applied via elem_classes ββ */
|
| 398 |
+
.tribe-box {
|
| 399 |
+
background: #0d1120 !important;
|
| 400 |
+
border: 1px solid #1a2235 !important;
|
| 401 |
+
border-radius: 6px !important;
|
| 402 |
+
overflow: hidden !important;
|
| 403 |
+
padding: 0 !important;
|
| 404 |
+
}
|
| 405 |
+
|
| 406 |
+
/* ββ Section label ββ */
|
| 407 |
+
.sec-label {
|
| 408 |
+
font-size: 0.7rem;
|
| 409 |
+
font-weight: 600;
|
| 410 |
+
letter-spacing: 0.1em;
|
| 411 |
+
text-transform: uppercase;
|
| 412 |
+
padding: 11px 16px;
|
| 413 |
+
border-bottom: 1px solid #1a2235;
|
| 414 |
+
margin: 0;
|
| 415 |
+
}
|
| 416 |
+
.sec-label-input { color: #4a9fd4; }
|
| 417 |
+
.sec-label-brain { color: #4a9fd4; }
|
| 418 |
+
.sec-label-timeline { color: #4a9fd4; }
|
| 419 |
+
|
| 420 |
+
/* ββ Inner padding for input col ββ */
|
| 421 |
+
.input-col-inner { padding: 14px 16px 14px; }
|
| 422 |
+
.input-col-inner > .gr-group,
|
| 423 |
+
.input-col-inner > div { margin-bottom: 10px; }
|
| 424 |
+
|
| 425 |
+
/* ββ Modality buttons ββ */
|
| 426 |
+
.modality-selector { width: 100% !important; }
|
| 427 |
+
.modality-selector > .wrap {
|
| 428 |
+
display: grid !important;
|
| 429 |
+
grid-template-columns: 1fr 1fr 1fr !important;
|
| 430 |
+
gap: 5px !important;
|
| 431 |
+
background: transparent !important;
|
| 432 |
+
border: none !important;
|
| 433 |
+
padding: 0 !important;
|
| 434 |
+
width: 100% !important;
|
| 435 |
+
}
|
| 436 |
+
.modality-selector label {
|
| 437 |
+
display: flex !important;
|
| 438 |
+
align-items: center !important;
|
| 439 |
+
justify-content: center !important;
|
| 440 |
+
padding: 9px 4px !important;
|
| 441 |
+
border-radius: 4px !important;
|
| 442 |
+
font-size: 0.82rem !important;
|
| 443 |
+
font-weight: 600 !important;
|
| 444 |
+
cursor: pointer !important;
|
| 445 |
+
transition: all 0.18s !important;
|
| 446 |
+
user-select: none !important;
|
| 447 |
+
text-align: center !important;
|
| 448 |
+
border: 1px solid transparent !important;
|
| 449 |
+
}
|
| 450 |
+
/* Force white text on ALL spans inside modality labels */
|
| 451 |
+
.modality-selector label span,
|
| 452 |
+
.modality-selector label > span,
|
| 453 |
+
.modality-selector span {
|
| 454 |
+
color: #ffffff !important;
|
| 455 |
+
display: inline !important;
|
| 456 |
+
}
|
| 457 |
+
/* Video β blue */
|
| 458 |
+
.modality-selector label:nth-child(1) {
|
| 459 |
+
background: #1a4a7a !important;
|
| 460 |
+
border-color: #2478bb !important;
|
| 461 |
+
}
|
| 462 |
+
.modality-selector label:nth-child(1):has(input:checked) {
|
| 463 |
+
background: #2478bb !important;
|
| 464 |
+
border-color: #4a9fd4 !important;
|
| 465 |
+
box-shadow: 0 0 10px rgba(36,120,187,0.5) !important;
|
| 466 |
+
}
|
| 467 |
+
/* Audio β teal */
|
| 468 |
+
.modality-selector label:nth-child(2) {
|
| 469 |
+
background: #0d4a3a !important;
|
| 470 |
+
border-color: #0f9e80 !important;
|
| 471 |
+
}
|
| 472 |
+
.modality-selector label:nth-child(2):has(input:checked) {
|
| 473 |
+
background: #0f9e80 !important;
|
| 474 |
+
border-color: #2dbba3 !important;
|
| 475 |
+
box-shadow: 0 0 10px rgba(15,158,128,0.5) !important;
|
| 476 |
+
}
|
| 477 |
+
/* Text β indigo */
|
| 478 |
+
.modality-selector label:nth-child(3) {
|
| 479 |
+
background: #2a2060 !important;
|
| 480 |
+
border-color: #4a5eab !important;
|
| 481 |
+
}
|
| 482 |
+
.modality-selector label:nth-child(3):has(input:checked) {
|
| 483 |
+
background: #4a5eab !important;
|
| 484 |
+
border-color: #7080d0 !important;
|
| 485 |
+
box-shadow: 0 0 10px rgba(74,94,171,0.5) !important;
|
| 486 |
+
}
|
| 487 |
+
.modality-selector input[type=radio] { display: none !important; }
|
| 488 |
+
|
| 489 |
+
/* ββ Gradio component labels ββ */
|
| 490 |
+
label > span {
|
| 491 |
+
font-size: 0.69rem !important;
|
| 492 |
+
color: #3a4f6a !important;
|
| 493 |
+
font-weight: 500 !important;
|
| 494 |
+
text-transform: uppercase !important;
|
| 495 |
+
letter-spacing: 0.09em !important;
|
| 496 |
+
}
|
| 497 |
+
|
| 498 |
+
/* ββ Upload / video / audio ββ */
|
| 499 |
+
.gr-video, .gr-audio,
|
| 500 |
+
[data-testid="video"], [data-testid="audio"] {
|
| 501 |
+
background: #080c18 !important;
|
| 502 |
+
border: 1px solid #1a2235 !important;
|
| 503 |
+
border-radius: 4px !important;
|
| 504 |
+
width: 100% !important;
|
| 505 |
+
color: #c9d4e8 !important;
|
| 506 |
+
}
|
| 507 |
+
|
| 508 |
+
/* Wrapper group: no border, no padding, invisible groups leave zero trace */
|
| 509 |
+
.upload-slot-wrap {
|
| 510 |
+
border: none !important;
|
| 511 |
+
background: transparent !important;
|
| 512 |
+
padding: 0 !important;
|
| 513 |
+
margin: 0 !important;
|
| 514 |
+
}
|
| 515 |
+
|
| 516 |
+
/* The actual component (Video/Audio) β fixed height */
|
| 517 |
+
.upload-slot {
|
| 518 |
+
height: 220px !important;
|
| 519 |
+
min-height: 220px !important;
|
| 520 |
+
max-height: 220px !important;
|
| 521 |
+
overflow: hidden !important;
|
| 522 |
+
position: relative !important;
|
| 523 |
+
}
|
| 524 |
+
.upload-slot > * { max-height: 220px !important; overflow: hidden !important; }
|
| 525 |
+
.upload-slot video {
|
| 526 |
+
width: 100% !important;
|
| 527 |
+
height: 170px !important;
|
| 528 |
+
max-height: 170px !important;
|
| 529 |
+
object-fit: contain !important;
|
| 530 |
+
display: block !important;
|
| 531 |
+
background: #080c18 !important;
|
| 532 |
+
}
|
| 533 |
+
|
| 534 |
+
/* Modality label β add breathing room below the "Modality" title */
|
| 535 |
+
.modality-selector > .wrap { margin-top: 6px !important; }
|
| 536 |
+
|
| 537 |
+
/* ββ Main row: panels align to top, NOT stretched to equal height ββ */
|
| 538 |
+
#main-row {
|
| 539 |
+
align-items: flex-start !important;
|
| 540 |
+
}
|
| 541 |
+
/* panel-brain shrinks to fit its content (the plot), no empty space */
|
| 542 |
+
.panel-brain {
|
| 543 |
+
align-self: flex-start !important;
|
| 544 |
+
}
|
| 545 |
+
|
| 546 |
+
/* ββ Textarea ββ */
|
| 547 |
+
textarea {
|
| 548 |
+
background: #080c18 !important;
|
| 549 |
+
border: 1px solid #1a2235 !important;
|
| 550 |
+
border-radius: 4px !important;
|
| 551 |
+
color: #c9d4e8 !important;
|
| 552 |
+
font-size: 0.86rem !important;
|
| 553 |
+
line-height: 1.6 !important;
|
| 554 |
+
resize: vertical !important;
|
| 555 |
+
width: 100% !important;
|
| 556 |
+
}
|
| 557 |
+
textarea::placeholder { color: #3a4f6a !important; }
|
| 558 |
+
textarea:focus { border-color: #1b4f8a !important; outline: none !important; }
|
| 559 |
+
|
| 560 |
+
/* ββ Slider & checkbox ββ */
|
| 561 |
+
input[type=range] { accent-color: #2478bb !important; }
|
| 562 |
+
input[type=checkbox] { accent-color: #2478bb !important; }
|
| 563 |
+
|
| 564 |
+
/* ββ Run button ββ */
|
| 565 |
+
.btn-run button {
|
| 566 |
+
background: #edf2ff !important;
|
| 567 |
+
color: #0b0e17 !important;
|
| 568 |
+
font-weight: 600 !important;
|
| 569 |
+
font-size: 0.87rem !important;
|
| 570 |
+
letter-spacing: 0.03em !important;
|
| 571 |
+
border: none !important;
|
| 572 |
+
border-radius: 4px !important;
|
| 573 |
+
padding: 11px 0 !important;
|
| 574 |
+
width: 100% !important;
|
| 575 |
+
cursor: pointer !important;
|
| 576 |
+
transition: background 0.15s !important;
|
| 577 |
+
margin-top: 8px !important;
|
| 578 |
+
}
|
| 579 |
+
.btn-run button:hover { background: #c0cfe8 !important; }
|
| 580 |
+
|
| 581 |
+
/* ββ Sample button ββ */
|
| 582 |
+
.btn-sample button {
|
| 583 |
+
background: transparent !important;
|
| 584 |
+
color: #3a4f6a !important;
|
| 585 |
+
border: 1px solid #1a2235 !important;
|
| 586 |
+
border-radius: 4px !important;
|
| 587 |
+
font-size: 0.74rem !important;
|
| 588 |
+
padding: 5px 12px !important;
|
| 589 |
+
cursor: pointer !important;
|
| 590 |
+
transition: all 0.15s !important;
|
| 591 |
+
width: 100% !important;
|
| 592 |
+
margin-top: 6px !important;
|
| 593 |
+
}
|
| 594 |
+
.btn-sample button:hover { color: #7a9abf !important; border-color: #1b4f8a !important; }
|
| 595 |
+
|
| 596 |
+
/* ββ Status ββ */
|
| 597 |
+
.status-line p {
|
| 598 |
+
font-size: 0.72rem !important;
|
| 599 |
+
color: #3a4f6a !important;
|
| 600 |
+
margin: 8px 0 0 !important;
|
| 601 |
+
font-variant-numeric: tabular-nums !important;
|
| 602 |
+
font-family: ui-monospace, monospace !important;
|
| 603 |
+
}
|
| 604 |
+
|
| 605 |
+
/* ββ Plot containers ββ */
|
| 606 |
+
.plot-3d {
|
| 607 |
+
width: 100% !important;
|
| 608 |
+
min-height: 500px !important;
|
| 609 |
+
overflow: hidden !important;
|
| 610 |
+
padding: 0 !important;
|
| 611 |
+
margin: 0 !important;
|
| 612 |
+
display: block !important;
|
| 613 |
+
}
|
| 614 |
+
.plot-3d > div { width: 100% !important; }
|
| 615 |
+
.plot-timeline {
|
| 616 |
+
background: #07090f !important;
|
| 617 |
+
width: 100% !important;
|
| 618 |
+
min-height: 340px !important;
|
| 619 |
+
overflow: hidden !important;
|
| 620 |
+
padding: 0 !important;
|
| 621 |
+
margin: 0 !important;
|
| 622 |
+
}
|
| 623 |
+
.plot-timeline .label-wrap { display: none !important; }
|
| 624 |
+
.plot-timeline .wrap { padding: 0 !important; margin: 0 !important; }
|
| 625 |
+
.panel-brain .wrap,
|
| 626 |
+
.panel-brain > * { gap: 0 !important; padding-top: 0 !important; margin-top: 0 !important; }
|
| 627 |
+
|
| 628 |
+
/* ββ Accordion ββ */
|
| 629 |
+
.gr-accordion > .label-wrap {
|
| 630 |
+
background: transparent !important;
|
| 631 |
+
border: none !important;
|
| 632 |
+
border-top: 1px solid #1a2235 !important;
|
| 633 |
+
padding: 9px 0 !important;
|
| 634 |
+
font-size: 0.74rem !important;
|
| 635 |
+
color: #3a4f6a !important;
|
| 636 |
+
}
|
| 637 |
+
.gr-accordion > .label-wrap:hover { color: #5a7aaa !important; }
|
| 638 |
+
|
| 639 |
+
/* ββ Model info ββ */
|
| 640 |
+
.info-grid { display: flex; flex-direction: column; }
|
| 641 |
+
.info-item {
|
| 642 |
+
display: flex; gap: 20px; padding: 9px 0;
|
| 643 |
+
border-bottom: 1px solid #0e1220;
|
| 644 |
+
font-size: 0.79rem; line-height: 1.55;
|
| 645 |
+
}
|
| 646 |
+
.info-item:last-child { border-bottom: none; }
|
| 647 |
+
.info-key {
|
| 648 |
+
min-width: 120px; color: #3a4f6a; font-weight: 500;
|
| 649 |
+
flex-shrink: 0; font-size: 0.71rem;
|
| 650 |
+
text-transform: uppercase; letter-spacing: 0.07em; padding-top: 2px;
|
| 651 |
+
}
|
| 652 |
+
.info-val { color: #5a7aaa; }
|
| 653 |
+
|
| 654 |
+
/* ββ Footer ββ */
|
| 655 |
+
.tribe-footer {
|
| 656 |
+
margin-top: 24px; padding-top: 16px;
|
| 657 |
+
border-top: 1px solid #1a2235;
|
| 658 |
+
font-size: 0.74rem; color: #3a4f6a; line-height: 1.7;
|
| 659 |
+
}
|
| 660 |
+
.footer-label {
|
| 661 |
+
display: block; font-weight: 600; text-transform: uppercase;
|
| 662 |
+
letter-spacing: 0.09em; font-size: 0.63rem; color: #1e2a3a; margin-bottom: 8px;
|
| 663 |
+
}
|
| 664 |
+
.tribe-footer ul { margin: 0; padding-left: 16px; }
|
| 665 |
+
.tribe-footer li { margin-bottom: 4px; }
|
| 666 |
+
.tribe-footer a { color: #3a4f6a; text-decoration: none; }
|
| 667 |
+
.tribe-footer a:hover { color: #5a7aaa; }
|
| 668 |
+
.tribe-footer strong { color: #4a6080; font-weight: 500; }
|
| 669 |
+
"""
|
| 670 |
+
|
| 671 |
+
# ββ Brain placeholder βββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 672 |
+
BRAIN_PLACEHOLDER = """
|
| 673 |
+
<div style="
|
| 674 |
+
width:100%; height:500px;
|
| 675 |
+
display:flex; flex-direction:column;
|
| 676 |
+
align-items:center; justify-content:center;
|
| 677 |
+
color:#1e2a3a; font-family:ui-monospace,'Cascadia Code','Source Code Pro',monospace;
|
| 678 |
+
font-size:0.78rem; letter-spacing:0.06em; gap:14px;
|
| 679 |
+
background:#0d1120;
|
| 680 |
+
">
|
| 681 |
+
<svg width="54" height="54" viewBox="0 0 54 54" fill="none" xmlns="http://www.w3.org/2000/svg">
|
| 682 |
+
<ellipse cx="19" cy="27" rx="13" ry="17" stroke="#1e3a5a" stroke-width="1.5"/>
|
| 683 |
+
<ellipse cx="35" cy="27" rx="13" ry="17" stroke="#1e3a5a" stroke-width="1.5"/>
|
| 684 |
+
<path d="M19 10 Q27 6 35 10" stroke="#1e3a5a" stroke-width="1.5" fill="none"/>
|
| 685 |
+
<path d="M19 44 Q27 48 35 44" stroke="#1e3a5a" stroke-width="1.5" fill="none"/>
|
| 686 |
+
<line x1="27" y1="10" x2="27" y2="44" stroke="#1e3a5a" stroke-width="1" stroke-dasharray="3 3"/>
|
| 687 |
+
<path d="M12 20 Q9 27 12 34" stroke="#1e3a5a" stroke-width="1.2" fill="none"/>
|
| 688 |
+
<path d="M42 20 Q45 27 42 34" stroke="#1e3a5a" stroke-width="1.2" fill="none"/>
|
| 689 |
+
</svg>
|
| 690 |
+
<span style="color:#1e3a5a; text-transform:uppercase; letter-spacing:0.12em;">
|
| 691 |
+
Run prediction to visualize cortical activity
|
| 692 |
+
</span>
|
| 693 |
+
</div>
|
| 694 |
+
"""
|
| 695 |
+
|
| 696 |
+
# ββ UI βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 697 |
+
with gr.Blocks() as demo:
|
| 698 |
+
|
| 699 |
+
gr.HTML(HEADER)
|
| 700 |
+
gr.HTML(NOTICE)
|
| 701 |
+
|
| 702 |
+
with gr.Accordion("About the model", open=False):
|
| 703 |
+
gr.HTML(MODEL_INFO)
|
| 704 |
+
|
| 705 |
+
with gr.Row(elem_id="main-row"):
|
| 706 |
+
|
| 707 |
+
# ββ Col left: Input ββ
|
| 708 |
+
with gr.Column(scale=1, elem_classes=["tribe-box", "panel-input"]):
|
| 709 |
+
gr.HTML('<div class="sec-label sec-label-input">Input</div>')
|
| 710 |
+
with gr.Column(elem_classes=["input-col-inner"]):
|
| 711 |
+
|
| 712 |
+
input_type = gr.Radio(
|
| 713 |
+
choices=["Video", "Audio", "Text"],
|
| 714 |
+
value="Video",
|
| 715 |
+
label="Modality",
|
| 716 |
+
elem_classes=["modality-selector"],
|
| 717 |
+
)
|
| 718 |
+
|
| 719 |
+
with gr.Group(visible=True, elem_classes=["upload-slot-wrap"]) as video_group:
|
| 720 |
+
video_file = gr.Video(label="Video file β mp4, mkv, avi", elem_classes=["upload-slot"])
|
| 721 |
+
|
| 722 |
+
sample_btn = gr.Button(
|
| 723 |
+
"Load sample (Sintel trailer)",
|
| 724 |
+
elem_classes=["btn-sample"],
|
| 725 |
+
visible=True,
|
| 726 |
+
)
|
| 727 |
+
|
| 728 |
+
with gr.Group(visible=False, elem_classes=["upload-slot-wrap"]) as audio_group:
|
| 729 |
+
audio_file = gr.Audio(
|
| 730 |
+
label="Audio file β wav, mp3, flac",
|
| 731 |
+
type="filepath",
|
| 732 |
+
elem_classes=["upload-slot"],
|
| 733 |
+
)
|
| 734 |
+
|
| 735 |
+
with gr.Group(visible=False) as text_group:
|
| 736 |
+
text_input = gr.Textbox(
|
| 737 |
+
label="Text",
|
| 738 |
+
placeholder="Enter text. Converted to speech internally.",
|
| 739 |
+
lines=4, max_lines=8,
|
| 740 |
+
)
|
| 741 |
+
|
| 742 |
+
with gr.Accordion("Settings", open=True):
|
| 743 |
+
n_timesteps = gr.Slider(
|
| 744 |
+
minimum=1, maximum=30, value=10, step=1,
|
| 745 |
+
label="Timesteps to visualize (1 TR = 1 s)",
|
| 746 |
+
)
|
| 747 |
+
vmin_slider = gr.Slider(
|
| 748 |
+
minimum=-0.5, maximum=1.0, value=0.5, step=0.05,
|
| 749 |
+
label="Activation threshold (vmin) β lower = more brain covered",
|
| 750 |
+
)
|
| 751 |
+
show_stimuli = gr.Checkbox(
|
| 752 |
+
value=True,
|
| 753 |
+
label="Overlay stimulus frames (video only)",
|
| 754 |
+
)
|
| 755 |
+
|
| 756 |
+
run_btn = gr.Button("Run prediction", elem_classes=["btn-run"])
|
| 757 |
+
status_md = gr.Markdown(value="", elem_classes=["status-line"])
|
| 758 |
+
|
| 759 |
+
# ββ Col right: 3D Brain ββ
|
| 760 |
+
with gr.Column(scale=2, elem_classes=["tribe-box", "panel-brain"]):
|
| 761 |
+
gr.HTML('<div class="sec-label sec-label-brain">Cortical surface — predicted BOLD response · drag to rotate · scroll to zoom</div>')
|
| 762 |
+
brain_3d = gr.HTML(value=BRAIN_PLACEHOLDER, elem_classes=["plot-3d"])
|
| 763 |
+
|
| 764 |
+
with gr.Row():
|
| 765 |
+
with gr.Column(elem_classes=["tribe-box"]):
|
| 766 |
+
gr.HTML('<div class="sec-label sec-label-timeline">Timeline — stimulus and predicted brain response per timestep</div>')
|
| 767 |
+
timeline_plot = gr.Plot(elem_classes=["plot-timeline"])
|
| 768 |
+
|
| 769 |
+
gr.HTML(NOTES_HTML)
|
| 770 |
+
|
| 771 |
+
# ββ Callbacks ββ
|
| 772 |
+
def toggle_inputs(choice):
|
| 773 |
+
return (
|
| 774 |
+
gr.update(visible=choice == "Video"),
|
| 775 |
+
gr.update(visible=choice == "Audio"),
|
| 776 |
+
gr.update(visible=choice == "Text"),
|
| 777 |
+
gr.update(visible=choice == "Video"),
|
| 778 |
+
)
|
| 779 |
+
|
| 780 |
+
input_type.change(
|
| 781 |
+
fn=toggle_inputs, inputs=[input_type],
|
| 782 |
+
outputs=[video_group, audio_group, text_group, sample_btn],
|
| 783 |
+
)
|
| 784 |
+
sample_btn.click(fn=download_sample_video, inputs=[], outputs=[video_file])
|
| 785 |
+
run_btn.click(
|
| 786 |
+
fn=run_prediction,
|
| 787 |
+
inputs=[input_type, video_file, audio_file, text_input, n_timesteps, vmin_slider, show_stimuli],
|
| 788 |
+
outputs=[brain_3d, timeline_plot, status_md],
|
| 789 |
+
show_progress="full",
|
| 790 |
+
)
|
| 791 |
+
|
| 792 |
+
demo.launch(
|
| 793 |
+
ssr_mode=False,
|
| 794 |
+
css=CSS,
|
| 795 |
+
theme=gr.themes.Base(
|
| 796 |
+
primary_hue=gr.themes.colors.slate,
|
| 797 |
+
neutral_hue=gr.themes.colors.slate,
|
| 798 |
+
font=gr.themes.GoogleFont("Inter"),
|
| 799 |
+
),
|
| 800 |
+
)
|
packages.txt
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
libosmesa6
|
| 2 |
+
libgl1
|
| 3 |
+
libegl1
|
| 4 |
+
libgles2
|
requirements.txt
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# TRIBE v2 β HuggingFace Spaces requirements
|
| 2 |
+
#
|
| 3 |
+
# NOTE: Do NOT pin gradio here β HF Spaces pre-installs its own version
|
| 4 |
+
# (currently 6.10.0) and any conflicting pin will break the build.
|
| 5 |
+
|
| 6 |
+
# Install tribev2 directly from GitHub with the [plotting] extra
|
| 7 |
+
tribev2[plotting] @ git+https://github.com/facebookresearch/tribev2.git
|
| 8 |
+
|
| 9 |
+
# ZeroGPU support (pre-installed on HF Spaces but listed for clarity)
|
| 10 |
+
spaces>=0.19.4
|
| 11 |
+
|
| 12 |
+
# Ensure headless matplotlib backend works
|
| 13 |
+
matplotlib>=3.8.0
|
| 14 |
+
|
| 15 |
+
# huggingface_hub for HF_TOKEN login helper
|
| 16 |
+
huggingface_hub>=0.23.0
|
| 17 |
+
|
| 18 |
+
# tribev2 uses `uvx` internally to run WhisperX (audio transcription).
|
| 19 |
+
# Installing uv via pip makes the `uvx` binary available in PATH.
|
| 20 |
+
uv>=0.4.0
|
| 21 |
+
|
| 22 |
+
# 3D brain visualization
|
| 23 |
+
plotly>=5.18.0
|