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Upload engine.py
Browse files
engine.py
CHANGED
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@@ -1,6 +1,5 @@
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import os
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import re
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import sqlite3
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from openai import OpenAI
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from difflib import get_close_matches
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from datetime import datetime
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@@ -26,7 +25,6 @@ api_key = os.getenv("OPENAI_API_KEY")
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if not api_key:
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raise ValueError("OPENAI_API_KEY environment variable is not set")
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client = OpenAI(api_key=api_key)
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conn = sqlite3.connect("mimic_iv.db", check_same_thread=False)
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# =========================
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@@ -44,14 +42,6 @@ def humanize(text):
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return f"Sure \n\n{text}"
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def friendly(text):
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global LAST_SUGGESTED_DATE
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if LAST_SUGGESTED_DATE:
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return f"{text}\n\nLast data available is {LAST_SUGGESTED_DATE}"
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else:
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# If date not set yet, try to get it
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date = get_latest_data_date()
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if date:
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return f"{text}\n\nLast data available is {date}"
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return text
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def is_confirmation(text):
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@@ -271,47 +261,6 @@ def describe_schema(max_tables=10):#what data you have or which table exist
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# TIME HANDLING
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# =========================
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def get_latest_data_date():
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"""
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Returns the most meaningful 'latest date' for the system.
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Priority:
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1. admissions.admittime
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2. icustays.intime
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3. chartevents.charttime
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"""
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checks = [
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("admissions", "admittime"),
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("icustays", "intime"),
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("chartevents", "charttime"),
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]
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for table, column in checks:
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try:
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result = conn.execute(
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f"SELECT MAX({column}) FROM {table}"
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).fetchone()
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if result and result[0]:
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return result[0]
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except Exception:
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continue
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return None
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def normalize_time_question(q):#total-actual date
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latest = get_latest_data_date()
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if not latest:
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return q
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if "today" in q:
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return q.replace("today", f"on {latest[:10]}")
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if "yesterday" in q:
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return q.replace("yesterday", f"on {latest[:10]}")
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return q
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# =========================
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# SQL GENERATION
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# =========================
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@@ -493,49 +442,6 @@ def explain_sql(sql):
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"has_filter": "where" in sql.lower()
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}
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def run_query(sql):
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"""Execute SQL query safely with validation and limits."""
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cur = conn.cursor()
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try:
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# 1️⃣ Validate query plan
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cur.execute("EXPLAIN QUERY PLAN " + sql)
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plan = cur.fetchall()
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for row in plan:
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detail = row[-1].lower()
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if "scan" in detail and "using index" not in detail:
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raise ValueError("Query rejected: full table scan detected")
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# 2️⃣ Execute query
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cur.execute(sql)
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rows = cur.fetchall()
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# ✅ 3️⃣ Guard against inflated COUNT results
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if "count(" in sql.lower() and "group by" not in sql.lower():
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if len(rows) == 1 and isinstance(rows[0][0], (int, float)):
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if rows[0][0] > 10_000_000:
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raise ValueError(
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"Suspiciously large count — possible join duplication"
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)
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# 4️⃣ Limit result size
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MAX_ROWS = 1000
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if len(rows) > MAX_ROWS:
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rows = rows[:MAX_ROWS]
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# 5️⃣ Extract columns
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cols = [c[0] for c in cur.description] if cur.description else []
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return cols, rows
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except sqlite3.Error as e:
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raise ValueError(f"Database query error: {str(e)}")
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finally:
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cur.close()
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# =========================
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# PATIENT SUMMARY
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# =========================
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# Must start with letter or underscore, rest alphanumeric/underscore
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return bool(re.match(r'^[a-zA-Z_][a-zA-Z0-9_]*$', name))
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def build_table_summary(table_name):
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"""Build summary for a table using metadata."""
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# Validate table name against metadata first
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schema = load_ai_schema()
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if table_name not in schema:
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return f"Table {table_name} not found in metadata."
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# Additional safety check
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if not validate_identifier(table_name):
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return f"Invalid table name: {table_name}"
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cur = conn.cursor()
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# Total rows (still need to query actual data for count)
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# Note: SQLite doesn't support parameterized table names
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# Since we validated table_name against metadata, it's safe
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try:
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total = cur.execute(
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f"SELECT COUNT(*) FROM {table_name}"
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).fetchone()[0]
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except sqlite3.Error as e:
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return f"Error querying table {table_name}: {str(e)}"
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columns = schema[table_name]["columns"] # {col_name: description, ...}
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summary = f"Here's a summary of **{table_name}**:\n\n"
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summary += f"• Total records: {total}\n"
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# Try to summarize categorical columns using metadata
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for col_name, col_desc in columns.items():
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# Validate column name
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if not validate_identifier(col_name):
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continue
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# Try to determine if it's a categorical column based on name/description
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# Skip likely numeric/date columns
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col_lower = col_name.lower()
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if any(skip in col_lower for skip in ["id", "_id", "date", "time", "count", "amount", "price"]):
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continue
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# Try to get breakdown for text-like columns
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try:
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# Note: SQLite doesn't support parameterized identifiers, so we validate
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rows = cur.execute(
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f"""
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SELECT {col_name}, COUNT(*)
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FROM {table_name}
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GROUP BY {col_name}
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ORDER BY COUNT(*) DESC
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LIMIT 5
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"""
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).fetchall()
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if rows:
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summary += f"\n• {col_name.capitalize()} breakdown:\n"
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for val, count in rows:
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summary += f" - {val}: {count}\n"
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except (sqlite3.Error, sqlite3.OperationalError) as e:
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# Ignore columns that can't be grouped (likely not categorical)
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pass
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summary += "\nYou can ask more detailed questions about this data."
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return summary
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# =========================
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# MAIN ENGINE
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# =========================
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def process_question(question):
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question = correct_spelling(question)
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question = normalize_time_question(question)
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# 1️⃣ Metadata requests
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if any(x in question.lower() for x in ["what data", "what tables"]):
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return {
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"status": "ok",
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"message": describe_schema()
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"data": []
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}
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# 2️⃣ Build LLM prompt
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except Exception as e:
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return {
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"status": "error",
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"message": str(e)
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"data": []
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}
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# 3️⃣ Generate SQL
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except Exception as e:
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return {
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"status": "error",
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"message": str(e)
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"data": []
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}
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if sql == "NOT_ANSWERABLE":
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return {
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"status": "ok",
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"message": "I don't have enough data to answer that."
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"data": []
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}
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# 4️⃣ Sanitize & validate
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sql = correct_table_names(sql)
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sql = validate_sql(sql)
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sql_info = explain_sql(sql)
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except Exception as e:
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return {
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"status": "error",
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"message": str(e),
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"data": []
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}
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# 5️⃣ Execute
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try:
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cols, rows = run_query(sql)
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except Exception as e:
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return {
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"status": "error",
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"message": str(e)
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"data": []
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}
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#
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log_interaction(
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user_q=question,
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sql=sql,
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result=rows[:10]
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)
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# 7️⃣ Return
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return {
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"
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import os
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import re
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from openai import OpenAI
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from difflib import get_close_matches
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from datetime import datetime
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if not api_key:
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raise ValueError("OPENAI_API_KEY environment variable is not set")
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client = OpenAI(api_key=api_key)
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# =========================
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return f"Sure \n\n{text}"
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def friendly(text):
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return text
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def is_confirmation(text):
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# TIME HANDLING
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# =========================
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# =========================
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# SQL GENERATION
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# =========================
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"has_filter": "where" in sql.lower()
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}
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# =========================
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# PATIENT SUMMARY
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# =========================
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# Must start with letter or underscore, rest alphanumeric/underscore
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return bool(re.match(r'^[a-zA-Z_][a-zA-Z0-9_]*$', name))
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# =========================
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# MAIN ENGINE
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# =========================
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def process_question(question):
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question = correct_spelling(question)
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# 1️⃣ Metadata requests
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if any(x in question.lower() for x in ["what data", "what tables"]):
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return {
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"status": "ok",
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"message": describe_schema()
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}
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# 2️⃣ Build LLM prompt
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except Exception as e:
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return {
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"status": "error",
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"message": str(e)
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}
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# 3️⃣ Generate SQL
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except Exception as e:
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return {
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"status": "error",
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"message": str(e)
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}
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if sql == "NOT_ANSWERABLE":
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return {
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"status": "ok",
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"message": "I don't have enough data to answer that."
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}
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# 4️⃣ Sanitize & validate
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sql = correct_table_names(sql)
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sql = validate_sql(sql)
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sql_info = explain_sql(sql)
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except Exception as e:
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return {
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"status": "error",
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"message": str(e)
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}
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# 5️⃣ Return SQL only (no execution)
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return {
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"status": "ok",
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"message": humanize(
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+
"Here’s the SQL query I generated based on your question 😊"
|
| 515 |
+
),
|
| 516 |
+
"sql": sql,
|
| 517 |
+
"sql_info": sql_info
|
| 518 |
+
}
|