bing-yan commited on
Commit
bc217ea
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1 Parent(s): 7e3b413

Expand mechanism full-name labels (CV: 9 ID + 4 OOD; TPD: 11 ID + 2 OOD)

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Files changed (1) hide show
  1. plotting.py +29 -13
plotting.py CHANGED
@@ -66,21 +66,37 @@ MECH_COLORS_TPD = {
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  MECH_FULL_NAMES_EC = {
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- "BV": "Butler–Volmer",
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- "MHC": "MarcusHush–Chidsey",
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- "Nernst": "Nernstian (reversible)",
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- "Ads": "Adsorption-coupled",
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- "EC": "EC mechanism",
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- "LH": "Langmuir–Hinshelwood",
 
 
 
 
 
 
 
 
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  }
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  MECH_FULL_NAMES_TPD = {
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- "FirstOrder": "1st-Order",
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- "SecondOrder": "2nd-Order",
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- "LH_Surface": "LH Surface",
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- "MvK": "Marsvan Krevelen",
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- "FirstOrderCovDep": "1st-Order Cov-Dep",
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- "DiffLimited": "Diff-Limited",
 
 
 
 
 
 
 
 
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  }
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@@ -106,7 +122,7 @@ def plot_mechanism_probs(probs_dict, domain="ec"):
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  bar_colors = [colors.get(n, COLORS["neutral"]) for n in names]
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  display_names = [f"{n} ({full_names.get(n, n)})" for n in names]
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- fig, ax = plt.subplots(figsize=(9, max(3, len(names) * 0.7)))
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  bars = ax.barh(range(len(names)), probs, color=bar_colors, edgecolor="white",
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  linewidth=0.5, height=0.7)
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  MECH_FULL_NAMES_EC = {
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+ "Nernst": "Nernstian (reversible electron transfer)",
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+ "BV": "ButlerVolmer (quasi-reversible electron transfer)",
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+ "MHC": "Marcus–Hush–Chidsey (non-adiabatic electron transfer)",
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+ "Ads": "surface-adsorbed redox couple",
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+ "EC": "electron transfer followed by chemical step",
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+ "LH": "Langmuir–Hinshelwood surface reaction",
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+ "EE": "two sequential electron transfers",
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+ "EC_prime": "electron transfer with catalytic regeneration",
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+ "CE": "chemical step preceding electron transfer",
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+ # OOD (not in trained set)
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+ "ECE": "electron transfer–chemical step–electron transfer",
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+ "EC_LH": "EC followed by Langmuir–Hinshelwood",
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+ "MHC_EC": "Marcus–Hush–Chidsey followed by chemical step",
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+ "MHC_LH": "Marcus–Hush–Chidsey followed by Langmuir–Hinshelwood",
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  }
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  MECH_FULL_NAMES_TPD = {
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+ "FirstOrder": "1st-order desorption",
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+ "SecondOrder": "2nd-order recombinative desorption",
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+ "ZerothOrder": "0th-order (multilayer) desorption",
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+ "LH_Surface": "LangmuirHinshelwood surface reaction",
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+ "MvK": "Mars–van Krevelen (lattice oxygen)",
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+ "FirstOrderCovDep": "1st-order with coverage-dependent Ed",
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+ "DiffLimited": "diffusion-limited desorption",
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+ "PrecursorMediated": "precursor-mediated desorption",
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+ "Dissociative": "dissociative desorption",
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+ "ActivatedAdsorption": "desorption with activated re-adsorption",
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+ "TwoSite": "two-site (heterogeneous) desorption",
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+ # OOD (not in trained set)
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+ "EleyRideal": "Eley–Rideal surface reaction",
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+ "BimolecularCovDep": "bimolecular coverage-dependent desorption",
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  }
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  bar_colors = [colors.get(n, COLORS["neutral"]) for n in names]
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  display_names = [f"{n} ({full_names.get(n, n)})" for n in names]
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+ fig, ax = plt.subplots(figsize=(11, max(3, len(names) * 0.7)))
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  bars = ax.barh(range(len(names)), probs, color=bar_colors, edgecolor="white",
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  linewidth=0.5, height=0.7)
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