Commit
Β·
24a5179
1
Parent(s):
bfe2b83
Add BLEU
Browse files
app.py
CHANGED
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@@ -2,8 +2,15 @@ import gradio as gr
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from PIL import Image
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import torch
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from transformers import VisionEncoderDecoderModel, AutoTokenizer, ViTFeatureExtractor, AutoImageProcessor, AutoModelForImageClassification
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import warnings
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warnings.filterwarnings("ignore", category=UserWarning)
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device = "cuda" if torch.cuda.is_available() else "cpu"
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@@ -38,6 +45,17 @@ def classify_image(image):
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results[name] = label
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return results
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def generate_captions(image, keywords):
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pixel_values = feature_extractor(images=image, return_tensors="pt").pixel_values.to(device)
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@@ -61,7 +79,7 @@ def generate_captions(image, keywords):
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return caption1, caption2
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def run_pipeline(image):
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classification = classify_image(image)
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keywords = list(classification.values())
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caption1, caption2 = generate_captions(image, keywords)
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@@ -73,30 +91,44 @@ def run_pipeline(image):
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+ (f"Tumor Type: {classification.get('tumor_type')}" if "tumor_type" in classification else "")
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)
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-
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with gr.Blocks(theme=gr.themes.Soft(primary_hue="pink"), css=custom_css) as demo:
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gr.Markdown(
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"""
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<link href="https://fonts.googleapis.com/css2?family=Poppins&display=swap" rel="stylesheet">
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<h1 style='text-align: center;'>π§ Brain Hierarchical Classification + Captioning</h1>
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<p style='text-align: center;'>Upload an MRI/CT brain image. The system will classify the image
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""",
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elem_id="title"
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)
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with gr.Row():
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with gr.Column():
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image_input = gr.Image(type="pil", label="πΌοΈ Upload Brain MRI/CT")
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btn = gr.Button("π Submit")
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with gr.Column():
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cls_box = gr.Textbox(label="π Classification Result", lines=4)
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cap1_box = gr.Textbox(label="π Caption without Keyword Integration", lines=4)
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cap2_box = gr.Textbox(label="π§ Caption with Keyword Integration", lines=4)
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btn.click(
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fn=run_pipeline,
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inputs=[image_input],
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outputs=[cls_box, cap1_box, cap2_box]
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)
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demo.launch()
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from PIL import Image
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import torch
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from transformers import VisionEncoderDecoderModel, AutoTokenizer, ViTFeatureExtractor, AutoImageProcessor, AutoModelForImageClassification
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from nltk.translate.bleu_score import sentence_bleu, SmoothingFunction
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import nltk
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import warnings
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try:
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nltk.data.find("tokenizers/punkt")
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except LookupError:
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nltk.download("punkt")
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warnings.filterwarnings("ignore", category=UserWarning)
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device = "cuda" if torch.cuda.is_available() else "cpu"
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results[name] = label
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return results
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def preprocess_caption(text):
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text = str(text).lower()
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for term in ["magnetic resonance imaging", "magnetic resonance image"]:
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text = text.replace(term, "mri")
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for term in ["computed tomography"]:
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text = text.replace(term, "ct")
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text = text.replace("t1-weighted", "t1").replace("t1w1", "t1").replace("t1ce", "t1")
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text = text.replace("t2-weighted", "t2").replace("t2w", "t2").replace("t2/flair", "flair")
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text = text.replace("tumour", "tumor").replace("lesions", "lesion").replace("-", " ")
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return text.split()
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def generate_captions(image, keywords):
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pixel_values = feature_extractor(images=image, return_tensors="pt").pixel_values.to(device)
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return caption1, caption2
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def run_pipeline(image, actual_caption):
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classification = classify_image(image)
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keywords = list(classification.values())
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caption1, caption2 = generate_captions(image, keywords)
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+ (f"Tumor Type: {classification.get('tumor_type')}" if "tumor_type" in classification else "")
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)
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if actual_caption.strip():
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ref = [preprocess_caption(actual_caption)]
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hyp1 = preprocess_caption(caption1)
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hyp2 = preprocess_caption(caption2)
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smooth = SmoothingFunction().method1
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bleu1 = f"{sentence_bleu(ref, hyp1, smoothing_function=smooth):.2f}"
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bleu2 = f"{sentence_bleu(ref, hyp2, smoothing_function=smooth):.2f}"
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else:
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bleu1 = "-"
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bleu2 = "-"
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return classification_text, caption1, caption2, bleu1, bleu2
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with gr.Blocks(theme=gr.themes.Soft(primary_hue="pink"), css=custom_css) as demo:
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gr.Markdown(
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"""
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<link href="https://fonts.googleapis.com/css2?family=Poppins&display=swap" rel="stylesheet">
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<h1 style='text-align: center;'>π§ Brain Hierarchical Classification + Captioning</h1>
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<p style='text-align: center;'>Upload an MRI/CT brain image. The system will classify the image and generate captions. Optionally, provide ground truth to see BLEU scores.</p>
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""",
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elem_id="title"
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)
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with gr.Row():
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with gr.Column():
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image_input = gr.Image(type="pil", label="πΌοΈ Upload Brain MRI/CT")
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actual_caption = gr.Textbox(label="π¬ Ground Truth Caption (optional)")
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btn = gr.Button("π Submit")
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with gr.Column():
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cls_box = gr.Textbox(label="π Classification Result", lines=4)
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cap1_box = gr.Textbox(label="π Caption without Keyword Integration", lines=4)
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cap2_box = gr.Textbox(label="π§ Caption with Keyword Integration", lines=4)
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bleu1_box = gr.Textbox(label="π BLEU (No Keyword)", lines=1)
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bleu2_box = gr.Textbox(label="π BLEU (With Keyword)", lines=1)
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btn.click(
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fn=run_pipeline,
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inputs=[image_input, actual_caption],
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outputs=[cls_box, cap1_box, cap2_box, bleu1_box, bleu2_box]
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)
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demo.launch()
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setup.sh
ADDED
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@@ -0,0 +1,2 @@
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#!/bin/bash
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python -m nltk.downloader punkt
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