Commit
Β·
31a9e9a
1
Parent(s):
f2ba684
Add actual caption field and calculate bleu score
Browse files- app.py +37 -9
- requirements.txt +2 -0
- setup.py +2 -0
app.py
CHANGED
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@@ -2,7 +2,12 @@ import gradio as gr
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from PIL import Image
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import torch
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from transformers import VisionEncoderDecoderModel, AutoTokenizer, ViTFeatureExtractor, AutoImageProcessor, AutoModelForImageClassification
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from nltk.translate.bleu_score import sentence_bleu
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device = "cuda" if torch.cuda.is_available() else "cpu"
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@@ -36,6 +41,24 @@ def classify_image(image):
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results[name] = label
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return results
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# Caption generation
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def generate_captions(image, keywords):
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pixel_values = feature_extractor(images=image, return_tensors="pt").pixel_values.to(device)
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@@ -68,7 +91,7 @@ def run_pipeline(image, actual_caption):
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keywords = list(classification.values())
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caption1, caption2 = generate_captions(image, keywords)
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# Format classification result
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classification_str = (
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f"π§ Plane: {classification.get('plane')}\n"
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f"πΌοΈ Modality: {classification.get('modality')}\n"
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@@ -79,15 +102,20 @@ def run_pipeline(image, actual_caption):
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# BLEU Score calculation
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if actual_caption.strip():
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ref = [actual_caption
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hyp = caption2
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score = sentence_bleu(ref, hyp
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bleu = f"π BLEU Score: {score:.2f}"
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else:
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bleu = "π BLEU Score: -"
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#
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result_text =
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return result_text
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@@ -96,7 +124,7 @@ with gr.Blocks(theme=gr.themes.Soft(primary_hue="pink")) as demo:
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gr.Markdown(
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"""
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<h1 style='text-align: center;'>π§ Brain Hierarchical Classification + Captioning</h1>
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<p style='text-align: center;'>Upload an MRI/CT brain image. The system will classify the image (plane, modality, abnormality, tumor) and generate two captions,
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"""
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)
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with gr.Row():
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@@ -105,7 +133,7 @@ with gr.Blocks(theme=gr.themes.Soft(primary_hue="pink")) as demo:
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actual_caption = gr.Textbox(label="π§ Ground Truth Caption (optional)")
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btn = gr.Button("π Submit")
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with gr.Column():
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output_box = gr.Textbox(label="
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btn.click(fn=run_pipeline, inputs=[image_input, actual_caption], outputs=output_box)
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from PIL import Image
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import torch
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from transformers import VisionEncoderDecoderModel, AutoTokenizer, ViTFeatureExtractor, AutoImageProcessor, AutoModelForImageClassification
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from nltk.translate.bleu_score import sentence_bleu
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import warnings
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import nltk
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nltk.download('punkt')
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warnings.filterwarnings("ignore", category=UserWarning)
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device = "cuda" if torch.cuda.is_available() else "cpu"
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results[name] = label
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return results
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# Preprocessing caption
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def preprocess_caption(text):
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text = str(text).lower()
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text = text.replace("magnetic resonance imaging", "mri")
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text = text.replace("magnetic resonance image", "mri")
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text = text.replace("computed tomography", "ct")
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text = text.replace("t1-weighted", "t1")
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text = text.replace("t1w1", "t1")
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text = text.replace("t1w", "t1")
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text = text.replace("t1ce", "t1")
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text = text.replace("t2-weighted", "t2")
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text = text.replace("t2w", "t2")
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text = text.replace("t2/flair", "flair")
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text = text.replace("tumour", "tumor")
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text = text.replace("lesions", "lesion")
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text = text.replace("-", " ")
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return text.split()
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# Caption generation
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def generate_captions(image, keywords):
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pixel_values = feature_extractor(images=image, return_tensors="pt").pixel_values.to(device)
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keywords = list(classification.values())
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caption1, caption2 = generate_captions(image, keywords)
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# Format classification result
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classification_str = (
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f"π§ Plane: {classification.get('plane')}\n"
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f"πΌοΈ Modality: {classification.get('modality')}\n"
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# BLEU Score calculation
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if actual_caption.strip():
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ref = [preprocess_caption(actual_caption)]
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hyp = preprocess_caption(caption2)
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score = sentence_bleu(ref, hyp)
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bleu = f"π BLEU Score: {score:.2f}"
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else:
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bleu = "π BLEU Score: -"
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# Final output
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result_text = (
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f"{classification_str}\n"
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f"βοΈ Caption without Keywords:\n{caption1}\n\n"
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f"β¨ Caption with Keywords:\n{caption2}\n\n"
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f"{bleu}"
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)
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return result_text
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gr.Markdown(
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"""
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<h1 style='text-align: center;'>π§ Brain Hierarchical Classification + Captioning</h1>
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<p style='text-align: center;'>Upload an MRI/CT brain image. The system will classify the image (plane, modality, abnormality, tumor type) and generate two captions. Optionally, provide a ground truth caption to get BLEU score.</p>
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"""
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)
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with gr.Row():
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actual_caption = gr.Textbox(label="π§ Ground Truth Caption (optional)")
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btn = gr.Button("π Submit")
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with gr.Column():
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output_box = gr.Textbox(label="π Result", lines=20)
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btn.click(fn=run_pipeline, inputs=[image_input, actual_caption], outputs=output_box)
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requirements.txt
CHANGED
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@@ -1,3 +1,5 @@
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torch
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transformers
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Pillow
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torch
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transformers
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gradio
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Pillow
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nltk
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setup.py
ADDED
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@@ -0,0 +1,2 @@
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import nltk
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nltk.download('punkt')
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