Spaces:
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Create RAGSample.py
Browse files- src/RAGSample.py +388 -0
src/RAGSample.py
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| 1 |
+
import os
|
| 2 |
+
from dotenv import load_dotenv
|
| 3 |
+
from langchain_community.document_loaders import WebBaseLoader
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| 4 |
+
from langchain.text_splitter import RecursiveCharacterTextSplitter
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| 5 |
+
from langchain_community.vectorstores import Chroma
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| 6 |
+
from langchain_ollama import ChatOllama
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| 7 |
+
from langchain.prompts import PromptTemplate
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| 8 |
+
from langchain_core.output_parsers import StrOutputParser
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| 9 |
+
from langchain_core.retrievers import BaseRetriever
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| 10 |
+
from langchain_core.runnables import Runnable
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| 11 |
+
from langchain_core.documents import Document
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| 12 |
+
from langchain_core.embeddings import Embeddings
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| 13 |
+
import chromadb
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| 14 |
+
import numpy as np
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| 15 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
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| 16 |
+
from sklearn.metrics.pairwise import cosine_similarity
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| 17 |
+
import pandas as pd
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| 18 |
+
from typing import Optional, List
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| 19 |
+
import re
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| 20 |
+
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| 21 |
+
# Disable ChromaDB telemetry to avoid the error
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| 22 |
+
os.environ["ANONYMIZED_TELEMETRY"] = "False"
|
| 23 |
+
os.environ["CHROMA_SERVER_HOST"] = "localhost"
|
| 24 |
+
os.environ["CHROMA_SERVER_HTTP_PORT"] = "8000"
|
| 25 |
+
|
| 26 |
+
|
| 27 |
+
class ImprovedTFIDFEmbeddings(Embeddings):
|
| 28 |
+
"""Improved TF-IDF based embedding function with better preprocessing."""
|
| 29 |
+
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| 30 |
+
def __init__(self):
|
| 31 |
+
self.vectorizer = TfidfVectorizer(
|
| 32 |
+
max_features=5000,
|
| 33 |
+
stop_words='english',
|
| 34 |
+
ngram_range=(1, 3),
|
| 35 |
+
min_df=1,
|
| 36 |
+
max_df=0.85,
|
| 37 |
+
lowercase=True,
|
| 38 |
+
strip_accents='unicode',
|
| 39 |
+
analyzer='word'
|
| 40 |
+
)
|
| 41 |
+
self.fitted = False
|
| 42 |
+
self.documents = []
|
| 43 |
+
|
| 44 |
+
def embed_documents(self, texts):
|
| 45 |
+
"""Create embeddings for a list of texts."""
|
| 46 |
+
if not self.fitted:
|
| 47 |
+
self.documents = texts
|
| 48 |
+
self.vectorizer.fit(texts)
|
| 49 |
+
self.fitted = True
|
| 50 |
+
|
| 51 |
+
# Transform texts to TF-IDF vectors
|
| 52 |
+
tfidf_matrix = self.vectorizer.transform(texts)
|
| 53 |
+
|
| 54 |
+
# Convert to dense arrays and normalize
|
| 55 |
+
embeddings = []
|
| 56 |
+
for i in range(tfidf_matrix.shape[0]):
|
| 57 |
+
embedding = tfidf_matrix[i].toarray().flatten()
|
| 58 |
+
# Normalize the embedding
|
| 59 |
+
norm = np.linalg.norm(embedding)
|
| 60 |
+
if norm > 0:
|
| 61 |
+
embedding = embedding / norm
|
| 62 |
+
# Pad or truncate to 512 dimensions
|
| 63 |
+
if len(embedding) < 512:
|
| 64 |
+
embedding = np.pad(embedding, (0, 512 - len(embedding)))
|
| 65 |
+
else:
|
| 66 |
+
embedding = embedding[:512]
|
| 67 |
+
embeddings.append(embedding.tolist())
|
| 68 |
+
|
| 69 |
+
return embeddings
|
| 70 |
+
|
| 71 |
+
def embed_query(self, text):
|
| 72 |
+
"""Create embedding for a single query text."""
|
| 73 |
+
if not self.fitted:
|
| 74 |
+
# If not fitted, fit with just this text
|
| 75 |
+
self.vectorizer.fit([text])
|
| 76 |
+
self.fitted = True
|
| 77 |
+
|
| 78 |
+
# Transform query to TF-IDF vector
|
| 79 |
+
tfidf_matrix = self.vectorizer.transform([text])
|
| 80 |
+
embedding = tfidf_matrix[0].toarray().flatten()
|
| 81 |
+
|
| 82 |
+
# Normalize the embedding
|
| 83 |
+
norm = np.linalg.norm(embedding)
|
| 84 |
+
if norm > 0:
|
| 85 |
+
embedding = embedding / norm
|
| 86 |
+
|
| 87 |
+
# Pad or truncate to 512 dimensions
|
| 88 |
+
if len(embedding) < 512:
|
| 89 |
+
embedding = np.pad(embedding, (0, 512 - len(embedding)))
|
| 90 |
+
else:
|
| 91 |
+
embedding = embedding[:512]
|
| 92 |
+
|
| 93 |
+
return embedding.tolist()
|
| 94 |
+
|
| 95 |
+
|
| 96 |
+
class SmartFAQRetriever(BaseRetriever):
|
| 97 |
+
"""Smart retriever optimized for FAQ datasets with semantic similarity."""
|
| 98 |
+
|
| 99 |
+
def __init__(self, documents: List[Document], k: int = 4):
|
| 100 |
+
super().__init__()
|
| 101 |
+
self._documents = documents
|
| 102 |
+
self._k = k
|
| 103 |
+
self._vectorizer = None # Use private attribute
|
| 104 |
+
|
| 105 |
+
@property
|
| 106 |
+
def documents(self):
|
| 107 |
+
return self._documents
|
| 108 |
+
|
| 109 |
+
@property
|
| 110 |
+
def k(self):
|
| 111 |
+
return self._k
|
| 112 |
+
|
| 113 |
+
def _get_relevant_documents(self, query: str) -> List[Document]:
|
| 114 |
+
"""Retrieve documents based on semantic similarity."""
|
| 115 |
+
# Ensure vectorizer is fitted
|
| 116 |
+
if not hasattr(self, '_vectorizer') or self._vectorizer is None or not hasattr(self._vectorizer, 'vocabulary_') or not self._vectorizer.vocabulary_:
|
| 117 |
+
print("[SmartFAQRetriever] Fitting vectorizer...")
|
| 118 |
+
self._vectorizer = TfidfVectorizer(
|
| 119 |
+
max_features=3000,
|
| 120 |
+
stop_words='english',
|
| 121 |
+
ngram_range=(1, 2),
|
| 122 |
+
min_df=1,
|
| 123 |
+
max_df=0.9
|
| 124 |
+
)
|
| 125 |
+
questions = []
|
| 126 |
+
for doc in self._documents:
|
| 127 |
+
if "QUESTION:" in doc.page_content:
|
| 128 |
+
question_part = doc.page_content.split("ANSWER:")[0]
|
| 129 |
+
question = question_part.replace("QUESTION:", "").strip()
|
| 130 |
+
questions.append(question)
|
| 131 |
+
else:
|
| 132 |
+
questions.append(doc.page_content)
|
| 133 |
+
self._vectorizer.fit(questions)
|
| 134 |
+
query_lower = query.lower().strip()
|
| 135 |
+
|
| 136 |
+
# Extract questions from documents
|
| 137 |
+
questions = []
|
| 138 |
+
for doc in self._documents:
|
| 139 |
+
if "QUESTION:" in doc.page_content:
|
| 140 |
+
question_part = doc.page_content.split("ANSWER:")[0]
|
| 141 |
+
question = question_part.replace("QUESTION:", "").strip()
|
| 142 |
+
questions.append(question)
|
| 143 |
+
else:
|
| 144 |
+
questions.append(doc.page_content)
|
| 145 |
+
|
| 146 |
+
# Transform query and questions to TF-IDF vectors
|
| 147 |
+
query_vector = self._vectorizer.transform([query_lower])
|
| 148 |
+
question_vectors = self._vectorizer.transform(questions)
|
| 149 |
+
|
| 150 |
+
# Calculate cosine similarities
|
| 151 |
+
similarities = cosine_similarity(query_vector, question_vectors).flatten()
|
| 152 |
+
|
| 153 |
+
# Get top k documents
|
| 154 |
+
top_indices = similarities.argsort()[-self._k:][::-1]
|
| 155 |
+
|
| 156 |
+
# Return documents with highest similarity scores
|
| 157 |
+
relevant_docs = [self._documents[i] for i in top_indices if similarities[i] > 0.1]
|
| 158 |
+
|
| 159 |
+
if not relevant_docs:
|
| 160 |
+
# Fallback to first k documents if no good matches
|
| 161 |
+
relevant_docs = self._documents[:self._k]
|
| 162 |
+
|
| 163 |
+
return relevant_docs
|
| 164 |
+
|
| 165 |
+
async def _aget_relevant_documents(self, query: str) -> List[Document]:
|
| 166 |
+
"""Async version of get_relevant_documents."""
|
| 167 |
+
return self._get_relevant_documents(query)
|
| 168 |
+
|
| 169 |
+
def setup_retriever(use_kaggle_data: bool = False, kaggle_dataset: Optional[str] = None,
|
| 170 |
+
kaggle_username: Optional[str] = None, kaggle_key: Optional[str] = None,
|
| 171 |
+
use_local_mental_health_data: bool = False) -> BaseRetriever:
|
| 172 |
+
"""
|
| 173 |
+
Creates a vector store with documents from test data, Kaggle datasets, or local mental health data.
|
| 174 |
+
|
| 175 |
+
Args:
|
| 176 |
+
use_kaggle_data: Whether to load Kaggle data instead of test documents
|
| 177 |
+
kaggle_dataset: Kaggle dataset name (e.g., 'username/dataset-name')
|
| 178 |
+
kaggle_username: Your Kaggle username (optional if using kaggle.json)
|
| 179 |
+
kaggle_key: Your Kaggle API key (optional if using kaggle.json)
|
| 180 |
+
use_local_mental_health_data: Whether to load local mental health FAQ data
|
| 181 |
+
"""
|
| 182 |
+
print("Setting up the retriever...")
|
| 183 |
+
|
| 184 |
+
if use_local_mental_health_data:
|
| 185 |
+
try:
|
| 186 |
+
print("Loading mental health FAQ data from local file...")
|
| 187 |
+
mental_health_file = "data/Mental_Health_FAQ.csv"
|
| 188 |
+
|
| 189 |
+
if not os.path.exists(mental_health_file):
|
| 190 |
+
print(f"Mental health FAQ file not found: {mental_health_file}")
|
| 191 |
+
use_local_mental_health_data = False
|
| 192 |
+
else:
|
| 193 |
+
# Load mental health FAQ data
|
| 194 |
+
df = pd.read_csv(mental_health_file)
|
| 195 |
+
documents = []
|
| 196 |
+
|
| 197 |
+
for _, row in df.iterrows():
|
| 198 |
+
question = row['Questions']
|
| 199 |
+
answer = row['Answers']
|
| 200 |
+
# Create document in FAQ format
|
| 201 |
+
content = f"QUESTION: {question}\nANSWER: {answer}"
|
| 202 |
+
documents.append(Document(page_content=content))
|
| 203 |
+
|
| 204 |
+
print(f"Loaded {len(documents)} mental health FAQ documents")
|
| 205 |
+
for i, doc in enumerate(documents[:3]):
|
| 206 |
+
print(f"Sample FAQ {i+1}: {doc.page_content[:200]}...")
|
| 207 |
+
|
| 208 |
+
except Exception as e:
|
| 209 |
+
print(f"Error loading mental health data: {e}")
|
| 210 |
+
use_local_mental_health_data = False
|
| 211 |
+
|
| 212 |
+
if use_kaggle_data and kaggle_dataset:
|
| 213 |
+
try:
|
| 214 |
+
from src.kaggle_loader import KaggleDataLoader
|
| 215 |
+
|
| 216 |
+
print(f"Loading Kaggle dataset: {kaggle_dataset}")
|
| 217 |
+
# Create loader without parameters - it will auto-load from kaggle.json
|
| 218 |
+
loader = KaggleDataLoader()
|
| 219 |
+
|
| 220 |
+
# Download the dataset
|
| 221 |
+
dataset_path = loader.download_dataset(kaggle_dataset)
|
| 222 |
+
|
| 223 |
+
# Load documents based on file type - only process files from this specific dataset
|
| 224 |
+
documents = []
|
| 225 |
+
|
| 226 |
+
# Get the dataset name to identify the correct files
|
| 227 |
+
dataset_name = kaggle_dataset.split('/')[-1]
|
| 228 |
+
print(f"Processing files in dataset directory: {dataset_path}")
|
| 229 |
+
|
| 230 |
+
for file in os.listdir(dataset_path):
|
| 231 |
+
file_path = os.path.join(dataset_path, file)
|
| 232 |
+
|
| 233 |
+
if file.endswith('.csv'):
|
| 234 |
+
print(f"Loading CSV file: {file}")
|
| 235 |
+
# For FAQ datasets, use the improved loading method
|
| 236 |
+
if 'faq' in file.lower() or 'mental' in file.lower():
|
| 237 |
+
documents.extend(loader.load_csv_dataset(file_path, [], chunk_size=50))
|
| 238 |
+
else:
|
| 239 |
+
# For other CSV files, use first few columns as text
|
| 240 |
+
df = pd.read_csv(file_path)
|
| 241 |
+
text_columns = df.columns[:3].tolist() # Use first 3 columns
|
| 242 |
+
documents.extend(loader.load_csv_dataset(file_path, text_columns, chunk_size=50))
|
| 243 |
+
|
| 244 |
+
elif file.endswith('.json'):
|
| 245 |
+
print(f"Loading JSON file: {file}")
|
| 246 |
+
documents.extend(loader.load_json_dataset(file_path))
|
| 247 |
+
|
| 248 |
+
elif file.endswith('.txt'):
|
| 249 |
+
print(f"Loading text file: {file}")
|
| 250 |
+
documents.extend(loader.load_text_dataset(file_path))
|
| 251 |
+
|
| 252 |
+
print(f"Loaded {len(documents)} documents from Kaggle dataset")
|
| 253 |
+
for i, doc in enumerate(documents[:3]):
|
| 254 |
+
print(f"Sample doc {i+1}: {doc.page_content[:200]}")
|
| 255 |
+
|
| 256 |
+
except Exception as e:
|
| 257 |
+
print(f"Error loading Kaggle data: {e}")
|
| 258 |
+
print("Falling back to test documents...")
|
| 259 |
+
use_kaggle_data = False
|
| 260 |
+
|
| 261 |
+
if not use_kaggle_data and not use_local_mental_health_data:
|
| 262 |
+
# No test documents - use mental health data as default
|
| 263 |
+
print("No specific data source specified, loading mental health FAQ data as default...")
|
| 264 |
+
try:
|
| 265 |
+
mental_health_file = "data/Mental_Health_FAQ.csv"
|
| 266 |
+
|
| 267 |
+
if not os.path.exists(mental_health_file):
|
| 268 |
+
raise FileNotFoundError(f"Mental health FAQ file not found: {mental_health_file}")
|
| 269 |
+
|
| 270 |
+
# Load mental health FAQ data
|
| 271 |
+
df = pd.read_csv(mental_health_file)
|
| 272 |
+
documents = []
|
| 273 |
+
|
| 274 |
+
for _, row in df.iterrows():
|
| 275 |
+
question = row['Questions']
|
| 276 |
+
answer = row['Answers']
|
| 277 |
+
# Create document in FAQ format
|
| 278 |
+
content = f"QUESTION: {question}\nANSWER: {answer}"
|
| 279 |
+
documents.append(Document(page_content=content))
|
| 280 |
+
|
| 281 |
+
print(f"Loaded {len(documents)} mental health FAQ documents")
|
| 282 |
+
for i, doc in enumerate(documents[:3]):
|
| 283 |
+
print(f"Sample FAQ {i+1}: {doc.page_content[:200]}...")
|
| 284 |
+
|
| 285 |
+
except Exception as e:
|
| 286 |
+
print(f"Error loading mental health data: {e}")
|
| 287 |
+
raise Exception("No valid data source available. Please ensure mental health FAQ data is present or provide Kaggle credentials.")
|
| 288 |
+
|
| 289 |
+
print("Creating TF-IDF embeddings...")
|
| 290 |
+
embeddings = ImprovedTFIDFEmbeddings()
|
| 291 |
+
|
| 292 |
+
print("Creating ChromaDB vector store...")
|
| 293 |
+
client = chromadb.PersistentClient(path="./src/chroma_db")
|
| 294 |
+
|
| 295 |
+
# Clear existing collections to prevent mixing old and new data
|
| 296 |
+
try:
|
| 297 |
+
collections = client.list_collections()
|
| 298 |
+
for collection in collections:
|
| 299 |
+
print(f"Deleting existing collection: {collection.name}")
|
| 300 |
+
client.delete_collection(collection.name)
|
| 301 |
+
except Exception as e:
|
| 302 |
+
print(f"Warning: Could not clear existing collections: {e}")
|
| 303 |
+
|
| 304 |
+
print(f"Processing {len(documents)} documents...")
|
| 305 |
+
|
| 306 |
+
# Check if this is a FAQ dataset and use smart retriever
|
| 307 |
+
if any("QUESTION:" in doc.page_content for doc in documents):
|
| 308 |
+
print("Using SmartFAQRetriever for better semantic matching...")
|
| 309 |
+
return SmartFAQRetriever(documents, k=4)
|
| 310 |
+
else:
|
| 311 |
+
# Use vector store for non-FAQ datasets
|
| 312 |
+
vectorstore = Chroma.from_documents(
|
| 313 |
+
documents=documents,
|
| 314 |
+
embedding=embeddings,
|
| 315 |
+
client=client
|
| 316 |
+
)
|
| 317 |
+
print("Retriever setup complete.")
|
| 318 |
+
return vectorstore.as_retriever(k=4)
|
| 319 |
+
|
| 320 |
+
def setup_rag_chain() -> Runnable:
|
| 321 |
+
"""Sets up the RAG chain with a prompt template and an LLM."""
|
| 322 |
+
# Define the prompt template for the LLM
|
| 323 |
+
prompt = PromptTemplate(
|
| 324 |
+
template="""You are an assistant for question-answering tasks.
|
| 325 |
+
Use the following documents to answer the question.
|
| 326 |
+
If you don't know the answer, just say that you don't know.
|
| 327 |
+
Use three sentences maximum and keep the answer concise:
|
| 328 |
+
Question: {question}
|
| 329 |
+
Documents: {documents}
|
| 330 |
+
Answer:
|
| 331 |
+
""",
|
| 332 |
+
input_variables=["question", "documents"],
|
| 333 |
+
)
|
| 334 |
+
|
| 335 |
+
# Initialize the LLM with dolphin-llama3:8b model
|
| 336 |
+
# Note: This requires the Ollama server to be running with the specified model
|
| 337 |
+
llm = ChatOllama(
|
| 338 |
+
model="dolphin-llama3:8b",
|
| 339 |
+
temperature=0,
|
| 340 |
+
)
|
| 341 |
+
|
| 342 |
+
# Create a chain combining the prompt template and LLM
|
| 343 |
+
return prompt | llm | StrOutputParser()
|
| 344 |
+
|
| 345 |
+
|
| 346 |
+
# Define the RAG application class
|
| 347 |
+
class RAGApplication:
|
| 348 |
+
def __init__(self, retriever: BaseRetriever, rag_chain: Runnable):
|
| 349 |
+
self.retriever = retriever
|
| 350 |
+
self.rag_chain = rag_chain
|
| 351 |
+
|
| 352 |
+
def run(self, question: str) -> str:
|
| 353 |
+
"""Runs the RAG pipeline for a given question."""
|
| 354 |
+
# Retrieve relevant documents
|
| 355 |
+
documents = self.retriever.invoke(question)
|
| 356 |
+
|
| 357 |
+
# Debug: Print retrieved documents
|
| 358 |
+
print(f"\nDEBUG: Retrieved {len(documents)} documents for question: '{question}'")
|
| 359 |
+
for i, doc in enumerate(documents):
|
| 360 |
+
print(f"DEBUG: Document {i+1}: {doc.page_content[:200]}...")
|
| 361 |
+
|
| 362 |
+
# Extract content from retrieved documents
|
| 363 |
+
doc_texts = "\n\n".join([doc.page_content for doc in documents])
|
| 364 |
+
|
| 365 |
+
# Debug: Print the combined document text
|
| 366 |
+
print(f"DEBUG: Combined document text: {doc_texts[:300]}...")
|
| 367 |
+
|
| 368 |
+
# Get the answer from the language model
|
| 369 |
+
answer = self.rag_chain.invoke({"question": question, "documents": doc_texts})
|
| 370 |
+
return answer
|
| 371 |
+
|
| 372 |
+
# Main execution block
|
| 373 |
+
if __name__ == "__main__":
|
| 374 |
+
load_dotenv()
|
| 375 |
+
|
| 376 |
+
# 1. Setup the components
|
| 377 |
+
retriever = setup_retriever()
|
| 378 |
+
rag_chain = setup_rag_chain()
|
| 379 |
+
|
| 380 |
+
# 2. Initialize the RAG application
|
| 381 |
+
rag_application = RAGApplication(retriever, rag_chain)
|
| 382 |
+
|
| 383 |
+
# 3. Run an example query
|
| 384 |
+
question = "What is prompt engineering"
|
| 385 |
+
print("\n--- Running RAG Application ---")
|
| 386 |
+
print(f"Question: {question}")
|
| 387 |
+
answer = rag_application.run(question)
|
| 388 |
+
print(f"Answer: {answer}")
|