mycelium / lm.py
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fix: PATH A embed uses sentence-transformers directly, not LM Studio API
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import io
import re
import json
import math
import base64
FALLBACK = {"summary": None, "tags": [], "intent": None}
INTENTS = ("learn", "act", "reference", "ephemeral")
from config import LM_STUDIO_URL, LM_MODEL, HF_MODEL, HF_VL_MODEL, EMBED_MODEL
USE_LM_STUDIO = bool(LM_STUDIO_URL)
SIMILARITY_THRESHOLD = 0.70 if USE_LM_STUDIO else 0.55
SIMILARITY_FLOOR = 0.40 # never connect below this regardless of rank
# ── cosine similarity ──────────────────────────────────────────────────────────
def _cosine(a, b):
dot = sum(x * y for x, y in zip(a, b))
mag = math.sqrt(sum(x * x for x in a)) * math.sqrt(sum(x * x for x in b))
return dot / mag if mag else 0.0
def find_related(embedding: list, all_embeddings: list, exclude_id: int, top_n: int = 2) -> list:
"""Return top_n most similar captures above SIMILARITY_FLOOR.
Rank-based (not threshold-based) so graph stays sparse even in domain-specific corpora.
"""
if not embedding or not all_embeddings:
return []
scored = [(cid, _cosine(embedding, emb)) for cid, emb in all_embeddings if cid != exclude_id]
scored.sort(key=lambda x: x[1], reverse=True)
return [cid for cid, score in scored[:top_n] if score >= SIMILARITY_FLOOR]
# ── prompts ────────────────────────────────────────────────────────────────────
EXTRACT_PROMPT = """\
Extract key insights from the content below and classify it.
Intent options:
learn = knowledge worth reinforcing over time
act = something to do, buy, watch, or follow up on
reference = useful to look up later but not critical to remember
ephemeral = fun or transient, no need to resurface
{take_section}Reply ONLY with valid JSON. No markdown. Start with {{ and end with }}.
Format: {{"title": "3-6 word title", "summary": "one sentence capturing the core idea", "claims": ["distinct insight 1", "distinct insight 2", "distinct insight 3"], "tags": ["tag1", "tag2", "tag3"], "intent": "learn"}}
Rules:
- title: 3-6 words, like a book chapter title, not a sentence
- summary: single sentence, the most important idea
- claims: 2-5 distinct, specific insights (not restatements of each other). If the user provided their take, make the first claim reflect their perspective.
- tags: 3-5 short lowercase tags
Content:
"""
RECALL_QUESTION_PROMPT = """\
You are writing a spaced-repetition recall question for a personal knowledge note.
The question must:
- Target ONE specific, verifiable fact or insight from the note
- Be unanswerable without having actually read the note (not inferable from the question alone)
- Name the topic but not give away the answer
- Be a single sentence, max 15 words
Bad: "What is the main idea of this note?" (too generic)
Bad: "What does the article say about caching?" (answerable from the question)
Good: "What threshold triggers batch normalization instability according to this note?"
Note content:
{content}
Reply with ONLY the question. No quotes, no punctuation at the end.
"""
SYNTHESIZE_PROMPT = """\
You are a personal knowledge assistant. The user asked: "{query}"
Here are their relevant notes (numbered):
{notes}
Write a concise answer (3-5 sentences) grounded strictly in these notes.
If the notes don't fully answer the question, say what they cover and what's missing.
Do not add knowledge beyond what is in the notes.
If any notes contradict each other on a key point, add one line at the end:
[TENSION: <note A says X, note B says Y>]
Reply in plain prose only. No bullet points, no headers, no markdown.\
"""
EXTEND_PROMPT = """\
The user is learning about: "{query}"
Their current knowledge from their notes:
{synthesis}
Reply ONLY with valid JSON. No markdown, no explanation. Start with {{ and end with }}.
Identify:
1. The single most important concept or gap NOT covered in their notes (1 sentence, "gap" key)
2. Three specific follow-up questions worth capturing answers to ("questions" key, array of 3 strings)
Example: {{"gap": "You haven't captured anything about ...", "questions": ["What is ...?", "How does ...?", "Why does ...?"]}}
"""
FEYNMAN_PROMPT = """\
You are testing someone on their own notes about "{query}".
Their notes:
{notes}
Generate exactly 3 short questions (one sentence each) that test recall of the most important points in these notes.
Make each question specific — it should reference something actually in the notes, not be generic.
Reply ONLY with valid JSON. No markdown. Start with {{ and end with }}.
Example: {{"questions": ["What is X?", "Why does Y happen according to these notes?", "How does Z work?"]}}
"""
GRADE_PROMPT = """\
You are grading self-test answers based on someone's own notes.
IMPORTANT RULES:
- If an answer is blank, empty, or "(blank)", ALWAYS assign verdict "wrong" and feedback "No answer was provided."
- Do not infer or fill in what the person might have meant — grade only what they wrote.
Notes:
{notes}
Grade each Q&A pair below.
Verdict options: "right" (answer captures the key point), "partial" (incomplete or vague), "wrong" (missed the point or blank).
Provide 1-sentence feedback for each.
Reply ONLY with valid JSON. No markdown. Start with {{ and end with }}.
Example: {{"grades": [{{"verdict": "right", "feedback": "Correct, the notes say X."}}, ...]}}
Q&A pairs:
{qa_pairs}
"""
ARC_PROMPT = """\
The user has been capturing notes about "{query}" over multiple dates. Identify how their understanding evolved.
Notes sorted oldest first:
{notes_with_dates}
Find 2-4 distinct phases. For each:
- label: 2-4 words describing the phase (e.g. "First exposure", "Going deeper")
- insight: 1-2 sentences on what they understood in this phase
- start_date, end_date (YYYY-MM-DD from the note dates)
- capture_count: number of notes in this phase
Reply ONLY with valid JSON. No markdown. Start with {{ and end with }}.
Example: {{"periods": [{{"label": "...", "start_date": "...", "end_date": "...", "insight": "...", "capture_count": 2}}]}}
"""
BRIEF_SYNTHESIS_PROMPT = """\
You are summarizing someone's personal knowledge captures for {date_label}.
They captured {count} item(s). Here is what they captured:
{notes}
Write a synthesis (3-4 sentences) speaking directly to them:
1. Name the main theme(s) across these captures
2. Surface the single most memorable insight
3. If captures span different areas, briefly connect them or note the contrast
Rules:
- Be specific — reference actual ideas from their captures, not generic summaries
- Write like a thoughtful friend reviewing their captures with them
- No bullet points, no headers, no markdown. Plain prose only.
"""
WEEKLY_SYNTHESIS_PROMPT = """\
Here are someone's daily synthesis notes from the past week:
{daily_entries}
Write a weekly synthesis (4-5 sentences) speaking directly to them:
1. What theme or idea kept resurfacing across different days?
2. How did any idea evolve or deepen from one day to the next?
3. Any surprising connection between things captured on different days?
Rules:
- Be specific — name the actual ideas, not just "you explored X"
- Surface something they might not have noticed themselves
- No bullet points, no headers, no markdown. Plain prose only.
"""
# ── shared parse helpers ───────────────────────────────────────────────────────
def _parse_rich(text: str) -> dict:
try:
text = text.strip()
if "```" in text:
text = text.split("```")[1].lstrip("json").strip()
start = text.find("{")
end = text.rfind("}") + 1
if start >= 0 and end > start:
data = json.loads(text[start:end])
else:
data = json.loads(text)
claims = data.get("claims") or []
if isinstance(claims, str):
claims = [claims]
return {
"title": (data.get("title") or "").strip(),
"summary": data.get("summary") or "",
"claims": [str(c) for c in claims[:5] if c],
"tags": data.get("tags") or [],
"intent": data.get("intent"),
}
except Exception:
return {**FALLBACK, "title": "", "claims": []}
def _parse_extend(text: str) -> dict:
text = re.sub(r'```json|```', '', text).strip()
match = re.search(r'\{.*\}', text, re.DOTALL)
if match:
try:
data = json.loads(match.group())
gap = str(data.get("gap") or data.get("gaps") or "").strip()
questions = data.get("questions") or data.get("question") or []
if isinstance(questions, str):
questions = [questions]
return {"gap": gap, "questions": list(questions)[:3]}
except Exception:
pass
return {"gap": "", "questions": []}
def _build_take_section(your_take: str) -> str:
if your_take and your_take.strip():
return f'The person\'s own take: "{your_take.strip()}"\n\n'
return ""
# ══════════════════════════════════════════════════════════════════════════════
# PATH A — LM Studio (local dev, USE_LM_STUDIO=True)
# ══════════════════════════════════════════════════════════════════════════════
if USE_LM_STUDIO:
from openai import OpenAI
from PIL import Image as _PILImage
from sentence_transformers import SentenceTransformer as _ST
_client = OpenAI(base_url=LM_STUDIO_URL, api_key="lm-studio")
_embed_model_inst_a = None
def _get_embed_model_a():
global _embed_model_inst_a
if _embed_model_inst_a is None:
_embed_model_inst_a = _ST(EMBED_MODEL, device="cpu")
return _embed_model_inst_a
def _lm_model():
if LM_MODEL:
return LM_MODEL
try:
models = _client.models.list()
return models.data[0].id if models.data else None
except Exception:
return None
def _chat(prompt: str) -> str:
model = _lm_model()
if not model:
return ""
resp = _client.chat.completions.create(
model=model, messages=[{"role": "user", "content": prompt}]
)
return resp.choices[0].message.content
def embed(text: str) -> list:
try:
model = _get_embed_model_a()
vec = model.encode(text[:2000], normalize_embeddings=True)
return vec.tolist()
except Exception:
return []
def _chat_image(file_path: str, text_prompt: str) -> str:
model = _lm_model()
if not model:
return ""
img = _PILImage.open(file_path).convert("RGB")
if max(img.width, img.height) > 768:
img.thumbnail((768, 768), _PILImage.LANCZOS)
buf = io.BytesIO()
img.save(buf, format="JPEG", quality=85)
b64 = base64.b64encode(buf.getvalue()).decode()
resp = _client.chat.completions.create(
model=model,
messages=[{"role": "user", "content": [
{"type": "text", "text": text_prompt},
{"type": "image_url", "image_url": {"url": f"data:image/jpeg;base64,{b64}"}},
]}],
)
return resp.choices[0].message.content
# ══════════════════════════════════════════════════════════════════════════════
# PATH B — HF Transformers (Spaces / cloud, USE_LM_STUDIO=False)
# ══════════════════════════════════════════════════════════════════════════════
else:
import torch
from transformers import pipeline, AutoProcessor, AutoModelForCausalLM
from sentence_transformers import SentenceTransformer
_text_pipe = None
_embed_model_inst = None
_vl_pipe = None
try:
import spaces as _spaces
_HF_SPACES = True
except ImportError:
_spaces = None
_HF_SPACES = False
def _gpu(fn):
if _HF_SPACES:
return _spaces.GPU(duration=120)(fn)
return fn
# Load text model to CPU at startup — ZeroGPU moves it to GPU per @_gpu call
def _get_text_pipe():
global _text_pipe
if _text_pipe is None:
print(f"[lm] Loading {HF_MODEL}…")
_text_pipe = pipeline(
"text-generation", model=HF_MODEL,
torch_dtype=torch.bfloat16,
)
print("[lm] Model ready")
return _text_pipe
def _get_embed_model():
global _embed_model_inst
if _embed_model_inst is None:
print(f"[lm] Loading {EMBED_MODEL}…")
_embed_model_inst = SentenceTransformer(EMBED_MODEL, device="cpu")
print("[lm] Embeddings ready")
return _embed_model_inst
def _extract_assistant(output) -> str:
if isinstance(output, list):
msgs = output[0].get("generated_text", output[0])
if isinstance(msgs, list):
for msg in reversed(msgs):
if msg.get("role") == "assistant":
return msg.get("content", "")
return str(msgs)
return str(output)
@_gpu
def _chat(prompt: str) -> str:
pipe = _get_text_pipe()
messages = [
{"role": "system", "content": "You are a helpful assistant. Follow the user's instructions exactly."},
{"role": "user", "content": prompt},
]
out = pipe(messages, max_new_tokens=512, do_sample=False)
return _extract_assistant(out)
# Embeddings run on CPU — fast enough, saves GPU quota
def embed(text: str) -> list:
try:
model = _get_embed_model()
vec = model.encode(text[:2000], normalize_embeddings=True)
return vec.tolist()
except Exception as e:
print(f"[lm] embed error: {e}")
return []
def _make_vl_inputs(processor, img, text_prompt: str, device):
"""Build processor inputs in whatever format this VL model expects.
Modern models (Qwen2.5-VL, InternVL, …) expose apply_chat_template and
need explicit image content blocks in the messages list. Older models
(BLIP-2, early LLaVA) accept a plain text + images call. Try the
standard chat-template path first; fall back to the simple form.
"""
if hasattr(processor, "apply_chat_template"):
try:
messages = [{"role": "user", "content": [
{"type": "image", "image": img},
{"type": "text", "text": text_prompt},
]}]
text = processor.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)
return processor(text=[text], images=[img], return_tensors="pt").to(device), True
except Exception:
pass
# Fallback: plain text + image (works for BLIP-2, older LLaVA, etc.)
return processor(text=text_prompt, images=img, return_tensors="pt").to(device), False
@_gpu
def _chat_image(file_path: str, text_prompt: str) -> str:
from PIL import Image as _PILImage
try:
from transformers import Qwen2_5_VLForConditionalGeneration as _VLCls
except ImportError:
_VLCls = AutoModelForCausalLM
global _vl_pipe
if _vl_pipe is None:
print(f"[lm] Loading VL model {HF_VL_MODEL}…")
_processor = AutoProcessor.from_pretrained(HF_VL_MODEL)
_vl_model_inst = _VLCls.from_pretrained(
HF_VL_MODEL, torch_dtype=torch.bfloat16,
)
_vl_pipe = (_processor, _vl_model_inst)
processor, vl_model = _vl_pipe
img = _PILImage.open(file_path).convert("RGB")
if max(img.width, img.height) > 768:
img.thumbnail((768, 768), _PILImage.LANCZOS)
device = next(vl_model.parameters()).device
inputs, used_template = _make_vl_inputs(processor, img, text_prompt, device)
input_len = inputs["input_ids"].shape[1] if used_template else 0
with torch.no_grad():
out = vl_model.generate(**inputs, max_new_tokens=256)
return processor.decode(out[0][input_len:], skip_special_tokens=True)
# ══════════════════════════════════════════════════════════════════════════════
# Business functions — defined ONCE, use _chat / embed / _chat_image above
# ══════════════════════════════════════════════════════════════════════════════
def process_text(content: str, your_take: str = "") -> dict:
try:
take_section = _build_take_section(your_take)
prompt = EXTRACT_PROMPT.format(take_section=take_section) + content
return _parse_rich(_chat(prompt))
except Exception:
return {**FALLBACK, "title": "", "claims": []}
def process_link(url: str, page_text: str, your_take: str = "", page_title: str = "") -> dict:
try:
take_section = _build_take_section(your_take)
title_hint = f"Page title: {page_title}\n" if page_title else ""
content = f"URL: {url}\n{title_hint}\nContent:\n{page_text[:8000]}"
prompt = EXTRACT_PROMPT.format(take_section=take_section) + content
result = _parse_rich(_chat(prompt))
if not result.get("title") and page_title:
result["title"] = page_title
return result
except Exception:
return {**FALLBACK, "title": page_title, "claims": []}
def process_image(file_path: str, description: str = "", your_take: str = "") -> dict:
try:
user_note = f'\nUser note: "{description}"' if description.strip() else ""
take_note = f'\nUser\'s take: "{your_take.strip()}"' if your_take.strip() else ""
text_prompt = (
"Describe what is in this image and extract key information and insights.\n"
"Intent options: learn (reinforce over time) | act (to do/follow-up) | reference (look up later) | ephemeral (fun/transient)\n"
f"{user_note}{take_note}\n"
"Reply ONLY with valid JSON. No markdown.\n"
'{"title": "3-6 word title", "summary": "one sentence core idea", "claims": ["insight 1", "insight 2"], "tags": ["tag1", "tag2"], "intent": "learn"}'
)
return _parse_rich(_chat_image(file_path, text_prompt))
except Exception:
return {**FALLBACK, "title": "", "claims": []}
def generate_recall_question(summary: str, intent: str, claims: list = []) -> str:
FALLBACKS = {
"learn": "What's the key insight here?",
"act": "What were you going to do?",
"reference": "When would you reach for this?",
"ephemeral": "Why did this catch your attention?",
}
if not summary:
return FALLBACKS.get(intent, "What do you remember about this?")
if claims:
content = "Summary: " + summary + "\nKey claims:\n" + "\n".join(f"- {c}" for c in claims[:4])
else:
content = summary
try:
q = _chat(RECALL_QUESTION_PROMPT.format(content=content))
q = q.strip().strip('"').strip("'").rstrip('.')
if q and 10 < len(q) < 150:
return q
except Exception:
pass
return FALLBACKS.get(intent, "What do you remember about this?")
def synthesize_answer(query: str, captures: list) -> str:
if not captures:
return ""
notes = "\n".join(
f"{i+1}. {c.get('summary') or c.get('raw') or ''}"
for i, c in enumerate(captures) if c.get('summary') or c.get('raw')
)
if not notes.strip():
return ""
try:
return _chat(SYNTHESIZE_PROMPT.format(query=query, notes=notes)).strip()[:1500]
except Exception:
return ""
def generate_extend(query: str, synthesis: str) -> dict:
if not synthesis:
return {"gap": "", "questions": []}
try:
return _parse_extend(_chat(EXTEND_PROMPT.format(query=query, synthesis=synthesis)))
except Exception:
return {"gap": "", "questions": []}
def generate_feynman_questions(query: str, captures: list) -> list:
if not captures:
return []
notes = "\n".join(
f"{i+1}. {c.get('summary') or c.get('raw') or ''}"
for i, c in enumerate(captures[:8]) if c.get('summary') or c.get('raw')
)
if not notes.strip():
return []
try:
resp = _chat(FEYNMAN_PROMPT.format(query=query, notes=notes))
resp = re.sub(r'```json|```', '', resp).strip()
m = re.search(r'\{.*\}', resp, re.DOTALL)
if m:
data = json.loads(m.group())
return [str(q) for q in (data.get("questions") or [])[:3] if q]
except Exception:
pass
return []
def grade_feynman_answers(qa_pairs: list, captures: list) -> list:
fallback = [{"verdict": "?", "feedback": "Could not grade."} for _ in qa_pairs]
if not captures or not qa_pairs:
return fallback
notes = "\n".join(
f"{i+1}. {c.get('summary') or c.get('raw') or ''}"
for i, c in enumerate(captures[:8]) if c.get('summary') or c.get('raw')
)
qa_text = "\n".join(
f"Q{i+1}: {p['question']}\nA{i+1}: {p.get('answer') or '(blank)'}"
for i, p in enumerate(qa_pairs)
)
try:
resp = _chat(GRADE_PROMPT.format(notes=notes, qa_pairs=qa_text))
resp = re.sub(r'```json|```', '', resp).strip()
m = re.search(r'\{.*\}', resp, re.DOTALL)
if m:
data = json.loads(m.group())
grades = data.get("grades") or []
result = [
{"verdict": str(g.get("verdict") or "partial"), "feedback": str(g.get("feedback") or "")}
for g in grades[:len(qa_pairs)]
]
while len(result) < len(qa_pairs):
result.append({"verdict": "?", "feedback": "Could not grade this answer."})
return result
except Exception:
pass
return fallback
def generate_learning_arc(query: str, captures: list) -> list:
if not captures:
return []
sorted_caps = sorted(captures, key=lambda c: c.get('created_at') or '')
notes_with_dates = "\n".join(
f"[{c.get('created_at', '')[:10]}] {c.get('summary') or c.get('raw') or ''}"
for c in sorted_caps[:15] if c.get('summary') or c.get('raw')
)
if not notes_with_dates.strip():
return []
try:
resp = _chat(ARC_PROMPT.format(query=query, notes_with_dates=notes_with_dates))
resp = re.sub(r'```json|```', '', resp).strip()
m = re.search(r'\{.*\}', resp, re.DOTALL)
if m:
data = json.loads(m.group())
periods = data.get("periods") or []
if isinstance(periods, list):
return periods[:4]
except Exception:
pass
return []
def generate_brief_synthesis(captures: list, date_label: str = "") -> str:
if not captures:
return ""
notes = "\n".join(
f"- [{c.get('intent', '?')}] {c.get('title') or ''}: {c.get('summary') or c.get('raw') or ''}".strip()
for c in captures if c.get('summary') or c.get('raw')
)
if not notes.strip():
return ""
prompt = BRIEF_SYNTHESIS_PROMPT.format(
date_label=date_label or "today", count=len(captures), notes=notes
)
try:
return _chat(prompt).strip()[:800]
except Exception:
return ""
def generate_weekly_synthesis(daily_entries: list) -> str:
if not daily_entries:
return ""
lines = "\n".join(
f"{e['date']} ({e.get('count', '?')} captures): {e['synthesis']}"
for e in daily_entries if e.get('synthesis', '').strip()
)
if not lines.strip():
return ""
try:
return _chat(WEEKLY_SYNTHESIS_PROMPT.format(daily_entries=lines)).strip()[:900]
except Exception:
return ""