Spaces:
Sleeping
Sleeping
Create app.py
Browse files
app.py
ADDED
|
@@ -0,0 +1,33 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import gradio as gr
|
| 2 |
+
from rdkit import Chem
|
| 3 |
+
from rdkit.Chem import AllChem
|
| 4 |
+
|
| 5 |
+
def get_sdf(smile: str) -> str:
|
| 6 |
+
"""
|
| 7 |
+
Convert a SMILES string to an SDF string
|
| 8 |
+
Args:
|
| 9 |
+
smile: The SMILES string of the molecule
|
| 10 |
+
Returns:
|
| 11 |
+
The SDF string of the molecule
|
| 12 |
+
"""
|
| 13 |
+
|
| 14 |
+
mol = Chem.MolFromSmiles(smile)
|
| 15 |
+
molH = Chem.AddHs(mol)
|
| 16 |
+
AllChem.EmbedMolecule(molH)
|
| 17 |
+
AllChem.MMFFOptimizeMolecule(molH)
|
| 18 |
+
|
| 19 |
+
img = Chem.Draw.MolToImage(molH)
|
| 20 |
+
|
| 21 |
+
sdf = Chem.MolToMolBlock(molH)
|
| 22 |
+
return sdf, img
|
| 23 |
+
|
| 24 |
+
|
| 25 |
+
gradio_app = gr.Interface(
|
| 26 |
+
get_sdf,
|
| 27 |
+
inputs=[gr.Textbox(label="SMILES to convert to SDF")],
|
| 28 |
+
outputs=[gr.Textbox(label="SDF: "), gr.Image(label="Image: ")],
|
| 29 |
+
title="Convert SMILES to SDF",
|
| 30 |
+
)
|
| 31 |
+
|
| 32 |
+
if __name__ == "__main__":
|
| 33 |
+
gradio_app.launch(mcp_server=True)
|