Update app.py

app.py

@@ -47,12 +47,14 @@ st.sidebar.markdown('Using transformer model')
 ## ======== Loading dataset ========
 ## Loading in Admission Dataset
 df = pd.read_csv('shpi25nov.csv')
+df.sort_values(by='SUBJECT_ID',ascending = True, inplace=True)
 
 # Loading in Admission chief Complaint and diagnosis
 df2 = pd.read_csv('cohort_cc_adm_diag.csv')
 
 # Loading in Dischare History
 df3 = pd.read_csv('cohort_past_history_12072022.csv')
+df3.sort_values(by='CHARTDATE',ascending = False, inplace=True)
 
 # combining both data into one 
 df = pd.merge(df, df2, on=['HADM_ID','SUBJECT_ID'])
@@ -69,7 +71,7 @@ df3["DIAGNOSIS"] = df3["DIAGNOSIS"].str.capitalize()
 df3["DISCHARGE_LOCATION"] = df3["DISCHARGE_LOCATION"].str.capitalize()
 
 df3["TEXT"] =df3["TEXT"].replace(r'\n','  \n ', regex=True) 
-
+df3["BertSummarizer"] =df3["BertSummarizer"].replace(r'#',' ', regex=True) 
 
 #Renaming column
 df.rename(columns={'SUBJECT_ID':'Patient_ID',
@@ -84,7 +86,7 @@ df3.rename(columns={'SUBJECT_ID':'Patient_ID',
 st.sidebar.header("Search for Patient:")
 
 # ===== Initial filter for patient and admission id =====
-patientid = df['Patient_ID']
+patientid = df['Patient_ID'].unique()
 patient = st.sidebar.selectbox('Select Patient ID:', patientid)    #Filter Patient
 admissionid = df['Admission_ID'].loc[df['Patient_ID'] == patient]  #Filter available Admission id for patient
 HospitalAdmission = st.sidebar.selectbox(' ', admissionid)   
@@ -140,9 +142,8 @@ with st.container():
         btnPastHistory = st.button('📇Past History (6 Mths)')
         if btnPastHistory:          
             inputNote = "Input History records"
-
-            
             
+           
             
 ##========= on Past History Tab  =========
 
@@ -155,7 +156,7 @@ with st.container():
         with col7:
             #st.date_input('Select Admission Date') # To replace with a dropdown filter instead 
             #st.selectbox('Past Episodes',pastHistoryEp)
-            pastHistory = st.selectbox('Select Past History Admission', pastHistoryEpDate,on_change=None,)
+            pastHistory = st.selectbox('Select Past History Admission', pastHistoryEpDate)
             
 if btnPastHistory:
     
@@ -166,7 +167,7 @@ if btnPastHistory:
     runtext = historyAdmission['hospital_course_processed'].values[0]
       
 else:
-    runtext =st.text_area(inputNote, str(original_text2), height=300)
+    runtext =st.text_area(inputNote, str(original_text2)[1:-1], height=300)
     
     
 
@@ -328,7 +329,7 @@ if not(btnPastHistory): #to not show summary and references text for Past Histor
             st.markdown('**CHIEF COMPLAINT:**')
             st.write(str(AdmissionChiefCom)[1:-1])
             st.markdown('**ADMISSION DIAGNOSIS:**')
-            st.markdown(str(diagnosis)[1:-1])
+            st.markdown(str(diagnosis)[1:-1].capitalize())
             st.markdown('**PROBLEM/ISSUE**')
             #st.markdown(problem_entities)
             st.markdown(f'<p style="background-color:PINK;color:#080808;font-size:16px;">{str(problem_entities)[1:-1]}</p>', unsafe_allow_html=True)