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Update app.py
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app.py
CHANGED
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@@ -23,8 +23,8 @@ if "visibility" not in st.session_state:
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#nlp = en_core_web_lg.load()
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nlp = spacy.load("en_ner_bc5cdr_md")
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nlp0 = spacy.load("en_ner_bc5cdr_md")
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nlp1 = spacy.load("en_ner_bc5cdr_md")
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st.set_page_config(page_title ='Clinical Note Summarization',
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#page_icon= "Notes",
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@@ -258,7 +258,7 @@ options = get_entity_options()
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#list of negative concepts from clinical note identified by negspacy
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results0 = negation_handling("en_ner_bc5cdr_md", lem_clinical_note, neg_model)
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matcher = match(
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#doc0: new doc object with added "NEG_ENTITY label"
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doc0 = overwrite_ent_lbl(matcher,doc)
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#nlp = en_core_web_lg.load()
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nlp = spacy.load("en_ner_bc5cdr_md")
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#nlp0 = spacy.load("en_ner_bc5cdr_md")
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#nlp1 = spacy.load("en_ner_bc5cdr_md")
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st.set_page_config(page_title ='Clinical Note Summarization',
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#page_icon= "Notes",
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#list of negative concepts from clinical note identified by negspacy
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results0 = negation_handling("en_ner_bc5cdr_md", lem_clinical_note, neg_model)
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matcher = match(nlp, results0,"NEG_ENTITY")
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#doc0: new doc object with added "NEG_ENTITY label"
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doc0 = overwrite_ent_lbl(matcher,doc)
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