remove smolagents as submodule

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "smolagents"]
-	path = smolagents
-	url = https://github.com/charles-azam/smolagents.git

pyproject.toml

@@ -34,8 +34,4 @@ deepengineer = "deepengineer:main"
 
 [build-system]
 requires = ["hatchling"]
-build-backend = "hatchling.build"
-
-[tool.uv.sources]
-smolagents = { path = "./smolagents", editable = true }
-
+build-backend = "hatchling.build"

src/deepengineer/deepsearch/analyse_markdown_agent.py

@@ -91,7 +91,6 @@ def create_agent(markdown: OCRResponse, model_id="deepseek/deepseek-chat"):
         planning_interval=4,
         name="pdf_agent",
         description="""A team member that will search the internet to answer your question.""",
-        provide_run_summary=True,
     )
     pdf_agent.prompt_templates["managed_agent"]["task"] += """You can navigate to .txt online files."""
 

tests/webcrawler/test_pdf_agent.py

@@ -1,4 +1,4 @@
-from deepengineer.deepsearch.analyse_markdown_agent import create_agent
+from deepengineer.deepsearch.analyse_markdown_agent import create_agent, GetTableOfContentsTool, GetMarkdownTool, GetPagesContentTool, FindInPdfTool
 from mistralai import OCRResponse
 from deepengineer.common_path import DATA_DIR
 
@@ -14,5 +14,13 @@ def test_pdf_agent():
     assert pdf_agent.name == "pdf_agent"
     assert pdf_agent.tools is not None
     assert len(pdf_agent.tools) == 4 + 1 # +1 for the final answer
+    
+    
+    GetTableOfContentsTool(ocr_response).forward()
+    GetMarkdownTool(ocr_response).forward()
+    GetPagesContentTool(ocr_response).forward([1,2,3])
+    FindInPdfTool(ocr_response).forward(["thermal neutron", "neutron"])
+    pdf_agent.run("Give me a summary of the document.")
+
+test_pdf_agent()
 
-test_pdf_agent()

uv.lock

@@ -434,7 +434,7 @@ requires-dist = [
     { name = "pypdf" },
     { name = "pytest-asyncio", specifier = ">=1.0.0" },
     { name = "python-dotenv", specifier = ">=1.1.1" },
-    { name = "smolagents", editable = "smolagents" },
+    { name = "smolagents", specifier = ">=1.19.0" },
     { name = "supabase", specifier = ">=2.16.0" },
     { name = "transformers" },
     { name = "wikipedia-api" },
@@ -2044,8 +2044,8 @@ wheels = [
 
 [[package]]
 name = "smolagents"
-version = "1.19.0.dev0"
-source = { editable = "smolagents" }
+version = "1.19.0"
+source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "huggingface-hub" },
     { name = "jinja2" },
@@ -2054,58 +2054,10 @@ dependencies = [
     { name = "requests" },
     { name = "rich" },
 ]
-
-[package.metadata]
-requires-dist = [
-    { name = "accelerate", marker = "extra == 'transformers'" },
-    { name = "arize-phoenix", marker = "extra == 'telemetry'" },
-    { name = "boto3", marker = "extra == 'bedrock'", specifier = ">=1.36.18" },
-    { name = "docker", marker = "extra == 'docker'", specifier = ">=7.1.0" },
-    { name = "duckduckgo-search", marker = "extra == 'toolkit'", specifier = ">=6.3.7" },
-    { name = "e2b-code-interpreter", marker = "extra == 'e2b'", specifier = ">=1.0.3" },
-    { name = "gradio", marker = "extra == 'gradio'", specifier = ">=5.14.0" },
-    { name = "helium", marker = "extra == 'vision'" },
-    { name = "huggingface-hub", specifier = ">=0.31.2" },
-    { name = "ipython", marker = "extra == 'test'", specifier = ">=8.31.0" },
-    { name = "jinja2", specifier = ">=3.1.4" },
-    { name = "litellm", marker = "extra == 'litellm'", specifier = ">=1.60.2" },
-    { name = "markdownify", marker = "extra == 'toolkit'", specifier = ">=0.14.1" },
-    { name = "mcp", marker = "extra == 'mcp'" },
-    { name = "mcpadapt", marker = "extra == 'mcp'", specifier = ">=0.1.8" },
-    { name = "mlx-lm", marker = "extra == 'mlx-lm'" },
-    { name = "numpy", marker = "extra == 'torch'", specifier = ">=1.21.2" },
-    { name = "openai", marker = "extra == 'openai'", specifier = ">=1.58.1" },
-    { name = "openinference-instrumentation-smolagents", marker = "extra == 'telemetry'", specifier = ">=0.1.4" },
-    { name = "opentelemetry-exporter-otlp", marker = "extra == 'telemetry'" },
-    { name = "opentelemetry-sdk", marker = "extra == 'telemetry'" },
-    { name = "pandas", marker = "extra == 'test'", specifier = ">=2.2.3" },
-    { name = "pillow", specifier = ">=10.0.1" },
-    { name = "pytest", marker = "extra == 'test'", specifier = ">=8.1.0" },
-    { name = "pytest-datadir", marker = "extra == 'test'" },
-    { name = "python-dotenv" },
-    { name = "python-dotenv", marker = "extra == 'e2b'", specifier = ">=1.0.1" },
-    { name = "python-dotenv", marker = "extra == 'test'", specifier = ">=1.0.1" },
-    { name = "rank-bm25", marker = "extra == 'test'" },
-    { name = "requests", specifier = ">=2.32.3" },
-    { name = "rich", specifier = ">=13.9.4" },
-    { name = "ruff", marker = "extra == 'quality'", specifier = ">=0.9.0" },
-    { name = "selenium", marker = "extra == 'vision'" },
-    { name = "smolagents", extras = ["all"], marker = "extra == 'test'" },
-    { name = "smolagents", extras = ["audio", "docker", "e2b", "gradio", "litellm", "mcp", "mlx-lm", "openai", "telemetry", "toolkit", "transformers", "vision", "bedrock"], marker = "extra == 'all'" },
-    { name = "smolagents", extras = ["quality", "test"], marker = "extra == 'dev'" },
-    { name = "smolagents", extras = ["torch"], marker = "extra == 'audio'" },
-    { name = "smolagents", extras = ["torch"], marker = "extra == 'transformers'" },
-    { name = "soundfile", marker = "extra == 'audio'" },
-    { name = "sqlalchemy", marker = "extra == 'dev'" },
-    { name = "torch", marker = "extra == 'torch'" },
-    { name = "torch", marker = "extra == 'vllm'" },
-    { name = "torchvision", marker = "extra == 'torch'" },
-    { name = "transformers", marker = "extra == 'transformers'", specifier = ">=4.0.0" },
-    { name = "vllm", marker = "extra == 'vllm'" },
-    { name = "websocket-client", marker = "extra == 'docker'" },
-    { name = "wikipedia-api", marker = "extra == 'test'", specifier = ">=0.8.1" },
-]
-provides-extras = ["bedrock", "torch", "audio", "docker", "e2b", "gradio", "litellm", "mcp", "mlx-lm", "openai", "telemetry", "toolkit", "transformers", "vision", "vllm", "all", "quality", "test", "dev"]
+sdist = { url = "https://files.pythonhosted.org/packages/0a/84/685cc60ebf97499f8066e0645983fe4697ff6fc5edba03d0b6be9c350a51/smolagents-1.19.0.tar.gz", hash = "sha256:e05426d59950f6ee4d082b5704f3831c17dbef11fa739a1dfaae0ccbaee175fc", size = 186042 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/6f/5c/2e1207d9dc17e31dfe2c67af34b3379f767351ef3cb55fd88677196439a4/smolagents-1.19.0-py3-none-any.whl", hash = "sha256:e33be79a85059613a771e29af8f24f1ed2f0d0d84c02bb1c503d655f1de5f4d3", size = 138209 },
+]
 
 [[package]]
 name = "sniffio"