Spaces:
Runtime error
Runtime error
Commit ·
47aa6b1
1
Parent(s): fc829e4
Upload app.py
Browse files
app.py
CHANGED
|
@@ -46,6 +46,7 @@ def fn(glycan, model):
|
|
| 46 |
glycan = [glycan]
|
| 47 |
label = [0]
|
| 48 |
data = next(iter(dataset_to_dataloader(glycan, label, batch_size=1)))
|
|
|
|
| 49 |
if model == "Ensemble":
|
| 50 |
pred = model_pred(data)
|
| 51 |
else:
|
|
@@ -57,6 +58,7 @@ def fn(glycan, model):
|
|
| 57 |
edge_index = edge_index.to(device)
|
| 58 |
batch = batch.to(device)
|
| 59 |
pred = model_pred(x,edge_index, batch).cpu().detach().numpy()[0]
|
|
|
|
| 60 |
pred = np.exp(pred)/sum(np.exp(pred)) # Softmax
|
| 61 |
pred = [float(x) for x in pred]
|
| 62 |
pred = {class_list[i]:pred[i] for i in range(15)}
|
|
@@ -65,7 +67,7 @@ def fn(glycan, model):
|
|
| 65 |
|
| 66 |
demo = gr.Interface(
|
| 67 |
fn=fn,
|
| 68 |
-
inputs=[gr.Textbox(label="Glycan sequence"), gr.Radio(label="Model",choices=["No data augmentation", "Random node deletion"])],
|
| 69 |
outputs=[gr.Label(num_top_classes=15, label="Prediction")],
|
| 70 |
allow_flagging=False,
|
| 71 |
title="SweetNet demo",
|
|
|
|
| 46 |
glycan = [glycan]
|
| 47 |
label = [0]
|
| 48 |
data = next(iter(dataset_to_dataloader(glycan, label, batch_size=1)))
|
| 49 |
+
|
| 50 |
if model == "Ensemble":
|
| 51 |
pred = model_pred(data)
|
| 52 |
else:
|
|
|
|
| 58 |
edge_index = edge_index.to(device)
|
| 59 |
batch = batch.to(device)
|
| 60 |
pred = model_pred(x,edge_index, batch).cpu().detach().numpy()[0]
|
| 61 |
+
|
| 62 |
pred = np.exp(pred)/sum(np.exp(pred)) # Softmax
|
| 63 |
pred = [float(x) for x in pred]
|
| 64 |
pred = {class_list[i]:pred[i] for i in range(15)}
|
|
|
|
| 67 |
|
| 68 |
demo = gr.Interface(
|
| 69 |
fn=fn,
|
| 70 |
+
inputs=[gr.Textbox(label="Glycan sequence"), gr.Radio(label="Model",choices=["No data augmentation", "Random node deletion", "Ensemble"])],
|
| 71 |
outputs=[gr.Label(num_top_classes=15, label="Prediction")],
|
| 72 |
allow_flagging=False,
|
| 73 |
title="SweetNet demo",
|