Update README.md

README.md

@@ -1,3 +1,102 @@
+
+# 🧬 Biological Network Analyzer
+
+An intelligent assistant for analyzing biological networks from **text or image input**. This app can extract reaction networks from uploaded diagrams using **Gemini Vision API**, parse them into graph structures, and generate:
+
+- 📈 ODEs (Ordinary Differential Equations)
+- 🧮 Jacobian matrices
+- 🔄 Cyclic dependency checks
+- 📊 Graph stats (edges, variables)
+
+All via a **Gradio-based conversational interface**.
+
+---
+
+## 🚀 Features
+
+- 🔤 **Text input** (e.g. `A + B -> C, C <-> D`)
+- 🖼️ **Image input** (upload scanned or digital diagrams)
+- 🧠 Google Gemini API integration to extract text-based reactions from images
+- 🧪 ODE system generation using mass-action kinetics
+- 🧠 Jacobian matrix computation via symbolic algebra (SymPy)
+- 🔁 Cycle detection and variable/edge counting
+- 🤖 LLM-based fallback Q&A via `flan-t5-base`
+- 🎨 Customizable Gradio theme (e.g. `Soft`, `Glass`, etc.)
+
+---
+
+## 🧰 Tech Stack
+
+| Component     | Technology                     |
+|---------------|-------------------------------|
+| Frontend UI   | [Gradio](https://gradio.app)  |
+| LLM Query     | [Flan-T5](https://huggingface.co/google/flan-t5-base) |
+| Image-to-Text | [Gemini API](https://ai.google.dev/) (Vision multimodal API) |
+| Graph Parsing | [NetworkX](https://networkx.org) |
+| Symbolic Math | [SymPy](https://www.sympy.org/) |
+
+---
+
+## 🖥️ Running the App on your device
+
+### ✅ Prerequisites
+
+- Python ≥ 3.8
+- Install dependencies:
+
+```bash
+pip install gradio transformers networkx sympy google-generativeai python-dotenv pillow
+````
+
+* Set your Gemini API key in a `.env` file:
+
+```
+GEMINI_API=your_api_key_here
+```
+
+### ▶️ Run
+
+```bash
+python your_script.py
+```
+
+Or use inside a [Google Colab notebook](https://colab.research.google.com/) for instant testing.
+
+---
+
+## 📷 Example Inputs
+
+### Text:
+
+```
+A + B -> C, C <-> D, D -> E
+```
+
+### Image:
+
+* Upload PNG or JPG of a biological reaction network
+* Gemini will parse it automatically
+
+---
+
+## 📌 Future Additions
+
+* Export ODEs/Jacobian as LaTeX/PDF
+* Stoichiometry & reaction rate customization
+
+---
+
+## 🧑‍🔬 Author
+
+Built by \[Devansh] for a project on **LLM-based Equation Discovery from Biological Networks**.
+
+---
+
+## 📝 License
+
+MIT License
+
+
 ---
 title: Network Analyzer
 emoji: 🦀
@@ -10,3 +109,5 @@ pinned: false
 ---
 
 Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
+
+