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Dev Nagaich commited on
Commit Β·
fb6a0d1
1
Parent(s): bd0da6b
Fix-Error 403
Browse files- Dockerfile +32 -13
- app.py +135 -102
Dockerfile
CHANGED
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@@ -6,6 +6,7 @@ WORKDIR /app
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RUN apt-get update && apt-get install -y \
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git \
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wget \
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libgl1 \
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libglib2.0-0 \
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libsm6 \
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@@ -16,34 +17,52 @@ RUN apt-get update && apt-get install -y \
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# Copy requirements first for better caching
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COPY requirements_deploy.txt .
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# Install Python dependencies
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RUN pip install --no-cache-dir -
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# Clone SAM2 repository
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RUN git clone https://github.com/facebookresearch/segment-anything-2.git && \
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cd segment-anything-2 && \
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pip install --no-cache-dir -e .
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#
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RUN mkdir -p segment-anything-2/checkpoints
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cd segment-anything-2/checkpoints && \
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wget https://dl.fbaipublicfiles.com/segment_anything_2/072824/sam2_hiera_small.pt
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# Download
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RUN pip install --no-cache-dir huggingface-hub && \
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# Copy application files
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COPY app.py .
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EXPOSE 7860
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ENV STREAMLIT_SERVER_PORT=7860
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ENV STREAMLIT_SERVER_ADDRESS=0.0.0.0
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ENV STREAMLIT_SERVER_HEADLESS=true
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RUN apt-get update && apt-get install -y \
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git \
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wget \
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curl \
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libgl1 \
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libglib2.0-0 \
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libsm6 \
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# Copy requirements first for better caching
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COPY requirements_deploy.txt .
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# Install Python dependencies with version constraints
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RUN pip install --no-cache-dir --upgrade pip && \
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pip install --no-cache-dir -r requirements_deploy.txt
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# Clone SAM2 repository
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RUN git clone https://github.com/facebookresearch/segment-anything-2.git && \
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cd segment-anything-2 && \
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pip install --no-cache-dir -e . && \
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cd ..
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# Create checkpoints directory
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RUN mkdir -p segment-anything-2/checkpoints
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# Download SAM2 base checkpoint
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RUN wget --no-check-certificate \
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https://dl.fbaipublicfiles.com/segment_anything_2/072824/sam2_hiera_small.pt \
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-O segment-anything-2/checkpoints/sam2_hiera_small.pt
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# Download VREyeSAM fine-tuned weights using Python
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RUN pip install --no-cache-dir huggingface-hub && \
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python -c "from huggingface_hub import hf_hub_download; \
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hf_hub_download(repo_id='devnagaich/VREyeSAM', \
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filename='VREyeSAM_uncertainity_best.torch', \
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local_dir='segment-anything-2/checkpoints', \
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local_dir_use_symlinks=False)"
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# Verify files were downloaded
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RUN ls -lh segment-anything-2/checkpoints/ && \
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test -f segment-anything-2/checkpoints/sam2_hiera_small.pt && \
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test -f segment-anything-2/checkpoints/VREyeSAM_uncertainity_best.torch && \
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echo "All checkpoints downloaded successfully!"
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# Copy application files
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COPY app.py .
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# Expose Streamlit port
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EXPOSE 7860
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# Set environment variables
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ENV STREAMLIT_SERVER_PORT=7860
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ENV STREAMLIT_SERVER_ADDRESS=0.0.0.0
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ENV STREAMLIT_SERVER_HEADLESS=true
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ENV STREAMLIT_BROWSER_GATHER_USAGE_STATS=false
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# Health check
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HEALTHCHECK CMD curl --fail http://localhost:7860/_stcore/health || exit 1
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# Run the application
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CMD ["streamlit", "run", "app.py", "--server.port=7860", "--server.address=0.0.0.0"]
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app.py
CHANGED
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@@ -6,6 +6,7 @@ from PIL import Image
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import io
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import sys
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import os
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# Add segment-anything-2 to path
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sys.path.insert(0, os.path.join(os.path.dirname(__file__), "segment-anything-2"))
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@@ -46,17 +47,41 @@ st.markdown("""
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def load_model():
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"""Load the VREyeSAM model"""
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try:
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-
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sam2_checkpoint = "segment-anything-2/checkpoints/sam2_hiera_small.pt"
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fine_tuned_weights = "segment-anything-2/checkpoints/VREyeSAM_uncertainity_best.torch"
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predictor = SAM2ImagePredictor(sam2_model)
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predictor.model.load_state_dict(torch.load(fine_tuned_weights, map_location=
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return predictor
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except Exception as e:
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st.error(f"Error loading model: {str(e)}")
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return None
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def read_and_resize_image(image):
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# Create a rectangular strip (normalize height)
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strip_height = 150
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aspect_ratio = w / h
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strip_width = int(strip_height * aspect_ratio)
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iris_strip = cv2.resize(iris_region, (strip_width, strip_height))
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@@ -168,15 +193,16 @@ def main():
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- Inconsistent lighting conditions
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**Model Performance:**
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- Recall: 0.870
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- F1-Score: 0.806
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""")
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st.header("Settings")
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show_overlay = st.checkbox("Show Mask Overlay", value=True)
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show_probabilistic = st.checkbox("Show Probabilistic Mask", value=False)
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# Load model
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with st.spinner("Loading VREyeSAM model..."):
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# Process button
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if st.button("π Segment Iris", type="primary"):
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with st.spinner("Segmenting iris..."):
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binary_pil.save(buf, format="PNG")
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st.download_button(
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label="Download Binary Mask",
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data=buf.getvalue(),
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file_name="binary_mask.png",
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mime="image/png"
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)
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with download_cols[1]:
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if show_overlay:
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# Overlay download
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overlay_pil = Image.fromarray(cv2.cvtColor(overlay, cv2.COLOR_BGR2RGB))
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buf = io.BytesIO()
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st.download_button(
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label="Download
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data=buf.getvalue(),
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file_name="
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mime="image/png"
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)
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# buf = io.BytesIO()
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# strip_pil.save(buf, format="PNG")
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# st.download_button(
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# label="Download Iris Strip",
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# data=buf.getvalue(),
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# file_name="iris_strip.png",
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# mime="image/png"
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# )
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# Statistics
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st.markdown("---")
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st.subheader("π Segmentation Statistics")
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stats_cols = st.columns(4)
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mask_area = np.sum(binary_mask > 0)
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total_area = binary_mask.shape[0] * binary_mask.shape[1]
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coverage = (mask_area / total_area) * 100
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with stats_cols[0]:
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st.metric("Mask Coverage", f"{coverage:.2f}%")
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with stats_cols[1]:
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st.metric("Image Size", f"{img_array.shape[1]}x{img_array.shape[0]}")
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with stats_cols[2]:
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st.metric("Mask Area (pixels)", f"{mask_area:,}")
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# with stats_cols[3]:
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# if iris_strip is not None:
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# st.metric("Strip Size", f"{iris_strip.shape[1]}x{iris_strip.shape[0]}")
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# Footer
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st.markdown("---")
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st.markdown("""
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<div style='text-align: center'>
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<p><strong>VREyeSAM</strong> - Virtual Reality Non-Frontal Iris Segmentation</p>
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<p>π <a href='https://github.com/GeetanjaliGTZ/VREyeSAM'>GitHub</a> |
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π§ <a href='mailto:geetanjalisharma546@gmail.com'>Contact</a></p>
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</div>
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import io
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import sys
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import os
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import traceback
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# Add segment-anything-2 to path
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sys.path.insert(0, os.path.join(os.path.dirname(__file__), "segment-anything-2"))
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def load_model():
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"""Load the VREyeSAM model"""
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try:
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# Path handling for both local and Docker environments
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model_cfg = "segment-anything-2/configs/sam2/sam2_hiera_s.yaml"
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sam2_checkpoint = "segment-anything-2/checkpoints/sam2_hiera_small.pt"
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fine_tuned_weights = "segment-anything-2/checkpoints/VREyeSAM_uncertainity_best.torch"
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# Verify files exist
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if not os.path.exists(sam2_checkpoint):
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st.error(f"β SAM2 checkpoint not found at: {sam2_checkpoint}")
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st.info("Current directory: " + os.getcwd())
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st.info("Directory contents: " + str(os.listdir(".")))
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return None
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if not os.path.exists(fine_tuned_weights):
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st.error(f"β VREyeSAM weights not found at: {fine_tuned_weights}")
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return None
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# Check file sizes
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sam2_size = os.path.getsize(sam2_checkpoint) / (1024 * 1024)
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vresam_size = os.path.getsize(fine_tuned_weights) / (1024 * 1024)
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st.info(f"π¦ SAM2 checkpoint: {sam2_size:.1f} MB")
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st.info(f"π¦ VREyeSAM weights: {vresam_size:.1f} MB")
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# Load model
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device = "cuda" if torch.cuda.is_available() else "cpu"
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st.info(f"π₯οΈ Loading model on: {device.upper()}")
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sam2_model = build_sam2(model_cfg, sam2_checkpoint, device=device)
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predictor = SAM2ImagePredictor(sam2_model)
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predictor.model.load_state_dict(torch.load(fine_tuned_weights, map_location=device))
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return predictor
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except Exception as e:
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st.error(f"β Error loading model: {str(e)}")
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st.error("Full traceback:")
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st.code(traceback.format_exc())
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return None
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def read_and_resize_image(image):
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# Create a rectangular strip (normalize height)
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strip_height = 150
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aspect_ratio = w / h if h > 0 else 1
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strip_width = int(strip_height * aspect_ratio)
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iris_strip = cv2.resize(iris_region, (strip_width, strip_height))
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- Inconsistent lighting conditions
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**Model Performance:**
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- Precision: 0.751
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- Recall: 0.870
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- F1-Score: 0.806
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- Mean IoU: 0.647
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""")
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st.header("Settings")
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show_overlay = st.checkbox("Show Mask Overlay", value=True)
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show_probabilistic = st.checkbox("Show Probabilistic Mask", value=False)
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show_iris_strip = st.checkbox("Show Iris Strip", value=True)
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# Load model
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with st.spinner("Loading VREyeSAM model..."):
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# Process button
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if st.button("π Segment Iris", type="primary"):
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with st.spinner("Segmenting iris..."):
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try:
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# Prepare image
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img_array = read_and_resize_image(image)
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# Perform segmentation
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binary_mask, prob_mask = segment_iris(predictor, img_array)
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# Extract iris strip
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iris_strip = extract_iris_strip(img_array, binary_mask) if show_iris_strip else None
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with col2:
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st.subheader("π― Binary Mask")
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binary_mask_img = (binary_mask * 255).astype(np.uint8)
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st.image(binary_mask_img, use_container_width=True)
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# Additional results
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st.markdown("---")
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st.subheader("π Segmentation Results")
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result_cols = st.columns(3)
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with result_cols[0]:
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if show_overlay:
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st.markdown("**Overlay View**")
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overlay = overlay_mask_on_image(img_array, binary_mask)
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st.image(overlay, use_container_width=True)
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with result_cols[1]:
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if show_probabilistic:
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st.markdown("**Probabilistic Mask**")
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prob_mask_img = (prob_mask * 255).astype(np.uint8)
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st.image(prob_mask_img, use_container_width=True)
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with result_cols[2]:
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if show_iris_strip and iris_strip is not None:
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st.markdown("**Extracted Iris Strip**")
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st.image(iris_strip, use_container_width=True)
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elif show_iris_strip:
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st.warning("No iris region detected")
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# Download options
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+
st.markdown("---")
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+
st.subheader("πΎ Download Results")
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+
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| 281 |
+
download_cols = st.columns(3)
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| 282 |
+
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| 283 |
+
with download_cols[0]:
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+
# Binary mask download
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+
binary_pil = Image.fromarray(binary_mask_img)
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| 286 |
buf = io.BytesIO()
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+
binary_pil.save(buf, format="PNG")
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| 288 |
st.download_button(
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| 289 |
+
label="Download Binary Mask",
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| 290 |
data=buf.getvalue(),
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| 291 |
+
file_name="binary_mask.png",
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| 292 |
mime="image/png"
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| 293 |
)
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| 294 |
+
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| 295 |
+
with download_cols[1]:
|
| 296 |
+
if show_overlay:
|
| 297 |
+
# Overlay download
|
| 298 |
+
overlay_pil = Image.fromarray(cv2.cvtColor(overlay, cv2.COLOR_BGR2RGB))
|
| 299 |
+
buf = io.BytesIO()
|
| 300 |
+
overlay_pil.save(buf, format="PNG")
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| 301 |
+
st.download_button(
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| 302 |
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label="Download Overlay",
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| 303 |
+
data=buf.getvalue(),
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| 304 |
+
file_name="overlay.png",
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| 305 |
+
mime="image/png"
|
| 306 |
+
)
|
| 307 |
+
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| 308 |
+
with download_cols[2]:
|
| 309 |
+
if iris_strip is not None:
|
| 310 |
+
# Iris strip download
|
| 311 |
+
strip_pil = Image.fromarray(cv2.cvtColor(iris_strip, cv2.COLOR_BGR2RGB))
|
| 312 |
+
buf = io.BytesIO()
|
| 313 |
+
strip_pil.save(buf, format="PNG")
|
| 314 |
+
st.download_button(
|
| 315 |
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label="Download Iris Strip",
|
| 316 |
+
data=buf.getvalue(),
|
| 317 |
+
file_name="iris_strip.png",
|
| 318 |
+
mime="image/png"
|
| 319 |
+
)
|
| 320 |
+
|
| 321 |
+
# Statistics
|
| 322 |
+
st.markdown("---")
|
| 323 |
+
st.subheader("π Segmentation Statistics")
|
| 324 |
+
stats_cols = st.columns(4)
|
| 325 |
+
|
| 326 |
+
mask_area = np.sum(binary_mask > 0)
|
| 327 |
+
total_area = binary_mask.shape[0] * binary_mask.shape[1]
|
| 328 |
+
coverage = (mask_area / total_area) * 100
|
| 329 |
+
|
| 330 |
+
with stats_cols[0]:
|
| 331 |
+
st.metric("Mask Coverage", f"{coverage:.2f}%")
|
| 332 |
+
with stats_cols[1]:
|
| 333 |
+
st.metric("Image Size", f"{img_array.shape[1]}x{img_array.shape[0]}")
|
| 334 |
+
with stats_cols[2]:
|
| 335 |
+
st.metric("Mask Area (pixels)", f"{mask_area:,}")
|
| 336 |
+
with stats_cols[3]:
|
| 337 |
+
if iris_strip is not None:
|
| 338 |
+
st.metric("Strip Size", f"{iris_strip.shape[1]}x{iris_strip.shape[0]}")
|
| 339 |
|
| 340 |
+
except Exception as e:
|
| 341 |
+
st.error(f"β Error during segmentation: {str(e)}")
|
| 342 |
+
st.error("Full traceback:")
|
| 343 |
+
st.code(traceback.format_exc())
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|
| 344 |
|
| 345 |
# Footer
|
| 346 |
st.markdown("---")
|
| 347 |
st.markdown("""
|
| 348 |
<div style='text-align: center'>
|
| 349 |
<p><strong>VREyeSAM</strong> - Virtual Reality Non-Frontal Iris Segmentation</p>
|
| 350 |
+
<p>Sharma et al., IJCB 2025</p>
|
| 351 |
<p>π <a href='https://github.com/GeetanjaliGTZ/VREyeSAM'>GitHub</a> |
|
| 352 |
π§ <a href='mailto:geetanjalisharma546@gmail.com'>Contact</a></p>
|
| 353 |
</div>
|