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Generates figures suitable for MICCAI/medical imaging papers:
- Bar charts comparing procedures and methods
- Radar plots for multi-metric comparison
- Box plots for per-sample distributions
- Heatmaps for Fitzpatrick equity analysis
- Table formatters for LaTeX
Usage:
from landmarkdiff.metrics_viz import MetricsVisualizer
viz = MetricsVisualizer(output_dir="paper/figures")
# Bar chart comparing procedures
viz.procedure_comparison(metrics_by_procedure)
# Radar plot for ablation study
viz.radar_plot(experiments)
# Equity heatmap
viz.fitzpatrick_heatmap(metrics_by_type)
"""
from __future__ import annotations
from pathlib import Path
from typing import Any
import numpy as np
class MetricsVisualizer:
"""Generate publication-quality figures from evaluation metrics.
Args:
output_dir: Directory to save generated figures.
dpi: Resolution for saved figures.
style: Matplotlib style preset.
"""
# Color palette (colorblind-safe, MICCAI-friendly)
COLORS = {
"rhinoplasty": "#4C72B0",
"blepharoplasty": "#55A868",
"rhytidectomy": "#C44E52",
"orthognathic": "#8172B2",
"baseline": "#CCB974",
"ours": "#4C72B0",
}
METRIC_LABELS = {
"ssim": "SSIM",
"lpips": "LPIPS",
"fid": "FID",
"nme": "NME",
"identity_sim": "ID Sim.",
"psnr": "PSNR (dB)",
}
METRIC_HIGHER_BETTER = {
"ssim": True,
"lpips": False,
"fid": False,
"nme": False,
"identity_sim": True,
"psnr": True,
}
def __init__(
self,
output_dir: str | Path = "figures",
dpi: int = 300,
style: str = "seaborn-v0_8-whitegrid",
) -> None:
self.output_dir = Path(output_dir)
self.output_dir.mkdir(parents=True, exist_ok=True)
self.dpi = dpi
self.style = style
def _get_plt(self) -> Any:
"""Import matplotlib with configuration."""
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
try:
plt.style.use(self.style)
except OSError:
plt.style.use("seaborn-v0_8")
# Publication font sizes
plt.rcParams.update({
"font.size": 10,
"axes.titlesize": 12,
"axes.labelsize": 11,
"xtick.labelsize": 9,
"ytick.labelsize": 9,
"legend.fontsize": 9,
"figure.titlesize": 13,
})
return plt
# ------------------------------------------------------------------
# Procedure comparison bar chart
# ------------------------------------------------------------------
def procedure_comparison(
self,
metrics_by_procedure: dict[str, dict[str, float]],
metrics: list[str] | None = None,
title: str = "Per-Procedure Performance",
filename: str = "procedure_comparison.pdf",
) -> Path:
"""Generate grouped bar chart comparing procedures.
Args:
metrics_by_procedure: {procedure: {metric: value}}.
metrics: Which metrics to show. None = auto-detect.
title: Figure title.
filename: Output filename.
Returns:
Path to saved figure.
"""
plt = self._get_plt()
if metrics is None:
all_metrics: set[str] = set()
for m in metrics_by_procedure.values():
all_metrics.update(m.keys())
metrics = sorted(all_metrics & set(self.METRIC_LABELS.keys()))
procedures = list(metrics_by_procedure.keys())
n_procs = len(procedures)
n_metrics = len(metrics)
fig, axes = plt.subplots(1, n_metrics, figsize=(3 * n_metrics, 4))
if n_metrics == 1:
axes = [axes]
for ax, metric in zip(axes, metrics):
values = [metrics_by_procedure[p].get(metric, 0) for p in procedures]
colors = [self.COLORS.get(p, "#999999") for p in procedures]
bars = ax.bar(range(n_procs), values, color=colors, width=0.6, edgecolor="white")
ax.set_xticks(range(n_procs))
ax.set_xticklabels(
[p[:5].title() for p in procedures],
rotation=30, ha="right",
)
ax.set_ylabel(self.METRIC_LABELS.get(metric, metric))
ax.set_title(self.METRIC_LABELS.get(metric, metric))
# Add value labels on bars
for bar, val in zip(bars, values):
ax.text(
bar.get_x() + bar.get_width() / 2, bar.get_height(),
f"{val:.3f}", ha="center", va="bottom", fontsize=8,
)
fig.suptitle(title, fontweight="bold")
fig.tight_layout()
out_path = self.output_dir / filename
fig.savefig(out_path, dpi=self.dpi, bbox_inches="tight")
plt.close(fig)
return out_path
# ------------------------------------------------------------------
# Radar plot for multi-metric comparison
# ------------------------------------------------------------------
def radar_plot(
self,
experiments: dict[str, dict[str, float]],
metrics: list[str] | None = None,
title: str = "Multi-Metric Comparison",
filename: str = "radar_plot.pdf",
) -> Path:
"""Generate radar/spider plot for comparing experiments.
Args:
experiments: {experiment_name: {metric: value}}.
metrics: Which metrics to show.
title: Figure title.
filename: Output filename.
Returns:
Path to saved figure.
"""
plt = self._get_plt()
if metrics is None:
metrics = sorted(
set.intersection(
*(set(v.keys()) for v in experiments.values())
) & set(self.METRIC_LABELS.keys())
)
n_metrics = len(metrics)
angles = np.linspace(0, 2 * np.pi, n_metrics, endpoint=False).tolist()
angles += angles[:1] # Close the polygon
fig, ax = plt.subplots(figsize=(6, 6), subplot_kw={"polar": True})
colors = list(self.COLORS.values())
for i, (name, values_dict) in enumerate(experiments.items()):
raw_values = []
for m in metrics:
val = values_dict.get(m, 0)
# Normalize: for "lower is better" metrics, invert
if not self.METRIC_HIGHER_BETTER.get(m, True):
val = 1 - min(val, 1) # Invert so higher = better on plot
raw_values.append(val)
# Normalize to [0, 1] range
vals = np.array(raw_values)
vals = vals / max(vals.max(), 1e-10)
vals = vals.tolist() + vals[:1].tolist()
color = colors[i % len(colors)]
ax.plot(angles, vals, "o-", linewidth=2, label=name, color=color)
ax.fill(angles, vals, alpha=0.15, color=color)
ax.set_xticks(angles[:-1])
ax.set_xticklabels([self.METRIC_LABELS.get(m, m) for m in metrics])
ax.set_ylim(0, 1.1)
ax.legend(loc="upper right", bbox_to_anchor=(1.3, 1.0))
ax.set_title(title, fontweight="bold", pad=20)
out_path = self.output_dir / filename
fig.savefig(out_path, dpi=self.dpi, bbox_inches="tight")
plt.close(fig)
return out_path
# ------------------------------------------------------------------
# Fitzpatrick equity heatmap
# ------------------------------------------------------------------
def fitzpatrick_heatmap(
self,
metrics_by_type: dict[str, dict[str, float]],
metric: str = "ssim",
title: str | None = None,
filename: str = "fitzpatrick_equity.pdf",
) -> Path:
"""Generate heatmap showing metric values across Fitzpatrick types and procedures.
Args:
metrics_by_type: {fitzpatrick_type: {procedure: value}}.
metric: Which metric to visualize.
title: Figure title.
filename: Output filename.
Returns:
Path to saved figure.
"""
plt = self._get_plt()
fitz_types = sorted(metrics_by_type.keys())
procedures = sorted(
set.union(*(set(v.keys()) for v in metrics_by_type.values()))
)
# Build matrix
matrix = np.zeros((len(fitz_types), len(procedures)))
for i, ft in enumerate(fitz_types):
for j, proc in enumerate(procedures):
matrix[i, j] = metrics_by_type[ft].get(proc, 0)
fig, ax = plt.subplots(figsize=(max(6, len(procedures) * 1.5), max(4, len(fitz_types) * 0.8)))
cmap = "RdYlGn" if self.METRIC_HIGHER_BETTER.get(metric, True) else "RdYlGn_r"
im = ax.imshow(matrix, cmap=cmap, aspect="auto")
ax.set_xticks(range(len(procedures)))
ax.set_xticklabels([p.title() for p in procedures], rotation=30, ha="right")
ax.set_yticks(range(len(fitz_types)))
ax.set_yticklabels(fitz_types)
ax.set_ylabel("Fitzpatrick Type")
# Annotate cells
for i in range(len(fitz_types)):
for j in range(len(procedures)):
ax.text(j, i, f"{matrix[i, j]:.3f}",
ha="center", va="center", fontsize=9,
color="white" if matrix[i, j] < np.median(matrix) else "black")
fig.colorbar(im, ax=ax, label=self.METRIC_LABELS.get(metric, metric))
if title is None:
title = f"{self.METRIC_LABELS.get(metric, metric)} by Fitzpatrick Type"
ax.set_title(title, fontweight="bold")
fig.tight_layout()
out_path = self.output_dir / filename
fig.savefig(out_path, dpi=self.dpi, bbox_inches="tight")
plt.close(fig)
return out_path
# ------------------------------------------------------------------
# Box plots for per-sample distribution
# ------------------------------------------------------------------
def distribution_boxplot(
self,
samples_by_group: dict[str, list[float]],
metric: str = "ssim",
title: str | None = None,
filename: str = "distribution.pdf",
) -> Path:
"""Generate box plot showing per-sample metric distributions.
Args:
samples_by_group: {group_name: [sample_values]}.
metric: Metric being plotted.
title: Figure title.
filename: Output filename.
Returns:
Path to saved figure.
"""
plt = self._get_plt()
groups = list(samples_by_group.keys())
data = [samples_by_group[g] for g in groups]
fig, ax = plt.subplots(figsize=(max(6, len(groups) * 1.2), 5))
bp = ax.boxplot(
data, patch_artist=True, widths=0.6,
medianprops={"color": "black", "linewidth": 1.5},
)
colors = [self.COLORS.get(g, "#4C72B0") for g in groups]
for patch, color in zip(bp["boxes"], colors):
patch.set_facecolor(color)
patch.set_alpha(0.7)
ax.set_xticklabels(
[g.title() for g in groups],
rotation=30, ha="right",
)
ax.set_ylabel(self.METRIC_LABELS.get(metric, metric))
if title is None:
title = f"{self.METRIC_LABELS.get(metric, metric)} Distribution"
ax.set_title(title, fontweight="bold")
# Add sample count annotations
for i, (_g, vals) in enumerate(zip(groups, data)):
ax.text(i + 1, ax.get_ylim()[0], f"n={len(vals)}",
ha="center", va="bottom", fontsize=8, color="gray")
fig.tight_layout()
out_path = self.output_dir / filename
fig.savefig(out_path, dpi=self.dpi, bbox_inches="tight")
plt.close(fig)
return out_path
# ------------------------------------------------------------------
# LaTeX table formatter
# ------------------------------------------------------------------
@staticmethod
def to_latex_table(
rows: list[dict[str, Any]],
metrics: list[str],
caption: str = "Quantitative results",
label: str = "tab:results",
highlight_best: bool = True,
) -> str:
"""Format metrics as a LaTeX table.
Args:
rows: List of dicts with 'name' and metric values.
metrics: List of metric names to include.
caption: Table caption.
label: LaTeX label.
highlight_best: Bold the best value per column.
Returns:
LaTeX table string.
"""
metric_labels = MetricsVisualizer.METRIC_LABELS
higher_better = MetricsVisualizer.METRIC_HIGHER_BETTER
# Find best values
best: dict[str, float] = {}
if highlight_best:
for m in metrics:
vals = [r.get(m) for r in rows if r.get(m) is not None]
if vals:
if higher_better.get(m, True):
best[m] = max(vals)
else:
best[m] = min(vals)
cols = "l" + "c" * len(metrics)
lines = [
"\\begin{table}[t]",
"\\centering",
f"\\caption{{{caption}}}",
f"\\label{{{label}}}",
f"\\begin{{tabular}}{{{cols}}}",
"\\toprule",
]
# Header
header = ["Method"]
for m in metrics:
name = metric_labels.get(m, m)
arrow = "$\\uparrow$" if higher_better.get(m, True) else "$\\downarrow$"
header.append(f"{name} {arrow}")
lines.append(" & ".join(header) + " \\\\")
lines.append("\\midrule")
# Data rows
for row in rows:
parts = [row.get("name", "").replace("_", "\\_")]
for m in metrics:
val = row.get(m)
if val is None:
parts.append("--")
else:
fmt = ".4f" if abs(val) < 10 else ".1f"
val_str = f"{val:{fmt}}"
if highlight_best and val == best.get(m):
val_str = f"\\textbf{{{val_str}}}"
parts.append(val_str)
lines.append(" & ".join(parts) + " \\\\")
lines.extend([
"\\bottomrule",
"\\end{tabular}",
"\\end{table}",
])
return "\n".join(lines)
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