utilize session for upload naming

app.py

@@ -377,12 +377,12 @@ def analyze_protocol_domains(export_csv: bool = True) -> str:
         Markdown formatted table of domains and identified instruments
     """
     # Check if protocol document exists
-    uploaded_files = [f for f in os.listdir(UPLOAD_PATH) if f.endswith('.pdf')]
-    if not uploaded_files:
+    session_qdrant_client = cl.user_session.get("session_qdrant_client")
+    if not session_qdrant_client or USER_EMBEDDINGS_NAME not in [c.name for c in session_qdrant_client.get_collections().collections]:
         return "No protocol document has been uploaded yet."
     
-    # Get the name of the uploaded protocol file
-    protocol_name = uploaded_files[0] if uploaded_files else "Unknown Protocol"
+    # Get the name of the uploaded protocol file from the user session
+    protocol_name = cl.user_session.get("protocol_filename", "Unknown Protocol")
     
     # For each domain, search for relevant instruments
     domain_analysis_results = []
@@ -666,6 +666,9 @@ async def on_chat_start():
         return    
     
     if files:
+        # Store the filename in the user session
+        cl.user_session.set("protocol_filename", files[0].name)
+        
         processing_msg = cl.Message(content="Processing your protocol PDF file...")
         await processing_msg.send()
         

pyproject.toml

@@ -5,17 +5,12 @@ description = "heal-sync"
 readme = "README.md"
 requires-python = ">=3.13"
 dependencies = [
-"IProgress",
 "PyMuPDF",
-"accelerate",
 "chainlit",
 "huggingface_hub",
-"ipykernel",
-"ipywidgets",
 "langchain",
 "langchain-community",
 "langchain-core",
-"langchain-experimental",
 "langchain-huggingface",
 "langchain-openai",
 "langchain-qdrant",
@@ -23,20 +18,26 @@ dependencies = [
 "langgraph",
 "langsmith",
 "lxml",
+"nltk",
 "openai",
+"openpyxl",
 "pymupdf",
-"pypdf2",
 "qdrant-client",
-"ragas",
+"sentence-transformers",
+"snowflake-connector-python",
+"streamlit",
 "torch",
-"transformers",
 "tqdm",
+"transformers",
 "unstructured",
-"wandb",
 "websockets",
-"openpyxl",
-"streamlit",
-"sentence-transformers",
-"snowflake-connector-python",
-"nltk",
+#not used
+#"langchain-experimental",
+#"accelerate",
+#"ipykernel",
+#"iprogress",
+#"ipywidgets",
+#"pypdf2",
+#"ragas",
+#"wandb",
 ]

uv.lock

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-    { name = "huggingface-hub" },
-    { name = "multiprocess" },
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-    { name = "pandas" },
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-[package.optional-dependencies]
-http = [
-    { name = "aiohttp" },
-]
-
 [[package]]
 name = "gitdb"
 version = "4.0.12"
@@ -749,16 +601,11 @@ name = "heal-sync"
 version = "0.1.0"
 source = { virtual = "." }
 dependencies = [
-    { name = "accelerate" },
     { name = "chainlit" },
     { name = "huggingface-hub" },
-    { name = "iprogress" },
-    { name = "ipykernel" },
-    { name = "ipywidgets" },
     { name = "langchain" },
     { name = "langchain-community" },
     { name = "langchain-core" },
-    { name = "langchain-experimental" },
     { name = "langchain-huggingface" },
     { name = "langchain-openai" },
     { name = "langchain-qdrant" },
@@ -770,9 +617,7 @@ dependencies = [
     { name = "openai" },
     { name = "openpyxl" },
     { name = "pymupdf" },
-    { name = "pypdf2" },
     { name = "qdrant-client" },
-    { name = "ragas" },
     { name = "sentence-transformers" },
     { name = "snowflake-connector-python" },
     { name = "streamlit" },
@@ -780,22 +625,16 @@ dependencies = [
     { name = "tqdm" },
     { name = "transformers" },
     { name = "unstructured" },
-    { name = "wandb" },
     { name = "websockets" },
 ]
 
 [package.metadata]
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     { name = "huggingface-hub" },
-    { name = "iprogress" },
-    { name = "ipykernel" },
-    { name = "ipywidgets" },
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     { name = "langchain-core" },
-    { name = "langchain-experimental" },
     { name = "langchain-huggingface" },
     { name = "langchain-openai" },
     { name = "langchain-qdrant" },
@@ -807,9 +646,7 @@ requires-dist = [
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     { name = "openpyxl" },
     { name = "pymupdf" },
-    { name = "pypdf2" },
     { name = "qdrant-client" },
-    { name = "ragas" },
     { name = "sentence-transformers" },
     { name = "snowflake-connector-python" },
     { name = "streamlit" },
@@ -817,7 +654,6 @@ requires-dist = [
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     { name = "transformers" },
     { name = "unstructured" },
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     { name = "websockets" },
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