biblos-api / app.py
rdmlx
Simplify API: Remove book/testament filters, search entire Bible by default
d9c155c
"""
Biblos Semantic Search API
Hugging Face Spaces deployment with FastAPI
Keeps model in memory for fast responses (~50-100ms after initial load)
"""
from fastapi import FastAPI, HTTPException
from fastapi.middleware.cors import CORSMiddleware
from pydantic import BaseModel, Field
from typing import List, Optional
import torch
import numpy as np
from transformers import AutoTokenizer, AutoModel
import json
import os
from pathlib import Path
import logging
# Configure logging
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
# Initialize FastAPI app
app = FastAPI(
title="Biblos Semantic Search API",
description="Semantic search over the entire Bible using BGE embeddings",
version="1.0.0"
)
# Enable CORS for all origins
app.add_middleware(
CORSMiddleware,
allow_origins=["*"],
allow_credentials=True,
allow_methods=["*"],
allow_headers=["*"],
)
# Request/Response models
class SearchRequest(BaseModel):
query: str = Field(..., description="Search query text", min_length=1, max_length=500)
limit: int = Field(10, description="Number of results to return", ge=1, le=100)
class SearchResult(BaseModel):
book: str
chapter: int
testament: str
content: str
similarity: float
class SearchResponse(BaseModel):
query: str
results: List[SearchResult]
total_searched: int
execution_time_ms: float
# Global variables for model and data
MODEL_NAME = "BAAI/bge-large-en-v1.5"
tokenizer = None
model = None
bible_embeddings = {}
bible_metadata = {}
# Book mappings
OLD_TESTAMENT_BOOKS = [
"gen", "exo", "lev", "num", "deu", "jos", "jdg", "rut", "1sa", "2sa",
"1ki", "2ki", "1ch", "2ch", "ezr", "neh", "est", "job", "psa", "pro",
"ecc", "sng", "isa", "jer", "lam", "ezk", "dan", "hos", "jol", "amo",
"oba", "jon", "mic", "nam", "hab", "zep", "hag", "zec", "mal"
]
NEW_TESTAMENT_BOOKS = [
"mat", "mrk", "luk", "jhn", "act", "rom", "1co", "2co", "gal", "eph",
"php", "col", "1th", "2th", "1ti", "2ti", "tit", "phm", "heb", "jas",
"1pe", "2pe", "1jn", "2jn", "3jn", "jud", "rev"
]
ALL_BOOKS = OLD_TESTAMENT_BOOKS + NEW_TESTAMENT_BOOKS
@app.on_event("startup")
async def load_model_and_data():
"""Load model and Bible embeddings into memory at startup"""
global tokenizer, model, bible_embeddings, bible_metadata
logger.info("Loading model and tokenizer...")
try:
tokenizer = AutoTokenizer.from_pretrained(MODEL_NAME)
model = AutoModel.from_pretrained(MODEL_NAME)
model.eval() # Set to evaluation mode
# Move to GPU if available
device = "cuda" if torch.cuda.is_available() else "cpu"
model = model.to(device)
logger.info(f"Model loaded successfully on {device}")
except Exception as e:
logger.error(f"Error loading model: {e}")
raise
logger.info("Loading Bible embeddings...")
try:
# Load embeddings for all books
data_dir = Path("data")
if not data_dir.exists():
logger.warning("Data directory not found. Embeddings will be empty.")
return
loaded_count = 0
for book in ALL_BOOKS:
json_file = data_dir / f"{book}.json"
if json_file.exists():
with open(json_file, 'r') as f:
data = json.load(f)
# Separate embeddings and metadata
embeddings_list = []
metadata_list = []
for entry in data:
embeddings_list.append(entry['embedding'])
metadata_list.append({
'content': entry['content'],
'chapter': entry['metadata']['chapter'],
'testament': entry['metadata']['testament']
})
bible_embeddings[book] = np.array(embeddings_list, dtype=np.float32)
bible_metadata[book] = metadata_list
loaded_count += 1
logger.info(f"Loaded {len(embeddings_list)} embeddings for {book}")
else:
logger.warning(f"File not found: {json_file}")
logger.info(f"Successfully loaded embeddings for {loaded_count} books")
except Exception as e:
logger.error(f"Error loading embeddings: {e}")
raise
def generate_embedding(text: str) -> np.ndarray:
"""Generate embedding for input text using loaded model"""
# Tokenize
inputs = tokenizer(text, return_tensors="pt", padding=True, truncation=True, max_length=512)
# Move to same device as model
device = next(model.parameters()).device
inputs = {k: v.to(device) for k, v in inputs.items()}
# Generate embeddings
with torch.no_grad():
outputs = model(**inputs)
# Mean pooling
embeddings = outputs.last_hidden_state.mean(dim=1)
# Normalize
embeddings = torch.nn.functional.normalize(embeddings, p=2, dim=1)
return embeddings.cpu().numpy()[0]
def cosine_similarity(query_embedding: np.ndarray, doc_embeddings: np.ndarray) -> np.ndarray:
"""Compute cosine similarity between query and document embeddings"""
# Normalize query embedding
query_norm = query_embedding / np.linalg.norm(query_embedding)
# Normalize document embeddings
doc_norms = np.linalg.norm(doc_embeddings, axis=1, keepdims=True)
doc_embeddings_norm = doc_embeddings / doc_norms
# Compute dot product (cosine similarity for normalized vectors)
similarities = np.dot(doc_embeddings_norm, query_norm)
return similarities
@app.get("/")
async def root():
"""Health check and API info"""
return {
"status": "online",
"model": MODEL_NAME,
"books_loaded": len(bible_embeddings),
"total_embeddings": sum(len(emb) for emb in bible_embeddings.values()),
"device": "cuda" if torch.cuda.is_available() else "cpu"
}
@app.get("/health")
async def health_check():
"""Detailed health check"""
return {
"model_loaded": model is not None,
"tokenizer_loaded": tokenizer is not None,
"embeddings_loaded": len(bible_embeddings) > 0,
"books_available": list(bible_embeddings.keys())
}
@app.post("/search", response_model=SearchResponse)
async def search(request: SearchRequest):
"""
Perform semantic search over the entire Bible (both Old and New Testament)
- **query**: The search query text
- **limit**: Number of results to return (1-100)
"""
import time
start_time = time.time()
# Validate model is loaded
if model is None or tokenizer is None:
raise HTTPException(status_code=503, detail="Model not loaded yet. Please try again in a moment.")
# Validate we have embeddings
if len(bible_embeddings) == 0:
raise HTTPException(status_code=503, detail="Bible embeddings not loaded. Please check data directory.")
try:
# Generate query embedding
logger.info(f"Generating embedding for query: {request.query[:50]}...")
query_embedding = generate_embedding(request.query)
# Search all books (both Old and New Testament)
books_to_search = list(bible_embeddings.keys())
# Collect all results
all_results = []
total_searched = 0
for book in books_to_search:
book_embeddings = bible_embeddings[book]
book_metadata = bible_metadata[book]
# Compute similarities
similarities = cosine_similarity(query_embedding, book_embeddings)
# Create results
for i, similarity in enumerate(similarities):
if not np.isnan(similarity) and np.isfinite(similarity):
all_results.append({
"book": book,
"chapter": book_metadata[i]['chapter'],
"testament": book_metadata[i]['testament'],
"content": book_metadata[i]['content'],
"similarity": float(similarity)
})
total_searched += len(similarities)
# Sort by similarity and limit
all_results.sort(key=lambda x: x['similarity'], reverse=True)
top_results = all_results[:request.limit]
execution_time = (time.time() - start_time) * 1000 # Convert to ms
logger.info(f"Search completed in {execution_time:.2f}ms, returning {len(top_results)} results")
return SearchResponse(
query=request.query,
results=top_results,
total_searched=total_searched,
execution_time_ms=round(execution_time, 2)
)
except Exception as e:
logger.error(f"Error during search: {e}")
raise HTTPException(status_code=500, detail=str(e))
if __name__ == "__main__":
import uvicorn
uvicorn.run(app, host="0.0.0.0", port=7860)