Spaces:
Sleeping
Sleeping
Commit ·
1f7dddc
1
Parent(s): 4ecd8d4
add example data
Browse files
app.py
CHANGED
|
@@ -8,6 +8,9 @@ import matplotlib
|
|
| 8 |
import matplotlib.pyplot as plt
|
| 9 |
from pathlib import Path
|
| 10 |
from tensorflow.keras.models import model_from_json
|
|
|
|
|
|
|
|
|
|
| 11 |
|
| 12 |
data_dir = 'data/'
|
| 13 |
sparse_data_dir = 'data/sparse_data/'
|
|
@@ -199,11 +202,10 @@ tile_size = 128
|
|
| 199 |
|
| 200 |
# Load the input matrix
|
| 201 |
# input_file = '../anchor_2_anchor.loop.chr22'
|
| 202 |
-
|
| 203 |
-
|
| 204 |
-
#
|
| 205 |
-
|
| 206 |
-
input_matrix = None
|
| 207 |
|
| 208 |
# Load the anchor list
|
| 209 |
anchor_list = pd.read_csv(anchor_file, sep='\t', names=['chr', 'start', 'end', 'anchor'])
|
|
|
|
| 8 |
import matplotlib.pyplot as plt
|
| 9 |
from pathlib import Path
|
| 10 |
from tensorflow.keras.models import model_from_json
|
| 11 |
+
from huggingface_hub import hf_hub_download
|
| 12 |
+
|
| 13 |
+
input_file = hf_hub_download(repo_id="dylanplummer/hicorr", filename="arima_beta.chr22", repo_type="dataset", token=os.environ['DATASET_SECRET'])
|
| 14 |
|
| 15 |
data_dir = 'data/'
|
| 16 |
sparse_data_dir = 'data/sparse_data/'
|
|
|
|
| 202 |
|
| 203 |
# Load the input matrix
|
| 204 |
# input_file = '../anchor_2_anchor.loop.chr22'
|
| 205 |
+
input_matrix = load_chr_ratio_matrix_from_sparse(os.path.dirname(input_file), os.path.basename(input_file),
|
| 206 |
+
os.path.dirname(anchor_file), force_symmetry=True)
|
| 207 |
+
# input_file = None
|
| 208 |
+
# input_matrix = None
|
|
|
|
| 209 |
|
| 210 |
# Load the anchor list
|
| 211 |
anchor_list = pd.read_csv(anchor_file, sep='\t', names=['chr', 'start', 'end', 'anchor'])
|