more cosmetic upgrades

README.md

@@ -1,6 +1,6 @@
 ---
 title: HiGLUE
-emoji: 📿
+emoji: ➰
 colorFrom: indigo
 colorTo: yellow
 sdk: gradio

app.py

@@ -184,7 +184,7 @@ def perturb(gene, locus1, locus2):
                      frameon=False, 
                      return_fig=True)
     fig.suptitle(f'{gene} expression after removing ' + a1 + '-' + a2)
-    fig.tight_layout()
+    #fig.tight_layout()
     #fig.patch.set_facecolor('none')
     #fig.patch.set_alpha(0.0)
 
@@ -197,6 +197,7 @@ def perturb(gene, locus1, locus2):
     fig, ax = plt.subplots(figsize=(6, 4))
     sc.pl.violin(rna, gene, groupby='celltype', layer='counts', show=False, ax=ax, rotation=90)
     ax.set_title(f'Normal {gene} expression')
+    fig.tight_layout()
     fig.canvas.draw()
     violin_img = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
     violin_img = violin_img.reshape(fig.canvas.get_width_height()[::-1] + (4,))
@@ -205,6 +206,7 @@ def perturb(gene, locus1, locus2):
     fig, ax = plt.subplots(figsize=(6, 4))
     sc.pl.violin(rna, 'new_mean', groupby='celltype', show=False, ax=ax, rotation=90)
     ax.set_title(f'{gene} expression after perturbation')
+    fig.tight_layout()
     fig.canvas.draw()
     violin_img_new = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
     violin_img_new = violin_img_new.reshape(fig.canvas.get_width_height()[::-1] + (4,))
@@ -214,6 +216,7 @@ def perturb(gene, locus1, locus2):
     sc.pl.violin(rna, 'log2FC', groupby='celltype', show=False, ax=ax, rotation=90)
     ax.set_title(f'{gene} expression change')
     ax.hlines(0, -1, len(celltypes), linestyles='dashed')
+    fig.tight_layout()
     fig.canvas.draw()
     violin_img_fc = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
     violin_img_fc = violin_img_fc.reshape(fig.canvas.get_width_height()[::-1] + (4,))