Spaces:
Runtime error
Runtime error
Commit ·
5130a4e
1
Parent(s): b0256eb
fix violin
Browse files
app.py
CHANGED
|
@@ -193,13 +193,13 @@ def perturb(gene, locus1, locus2):
|
|
| 193 |
# convert from argb to rgba
|
| 194 |
image_from_plot = image_from_plot[:, :, [1, 2, 3, 0]]
|
| 195 |
|
| 196 |
-
fig = sc.pl.violin(rna, gene, groupby='celltype', return_fig=True)
|
| 197 |
fig.canvas.draw()
|
| 198 |
violin_img = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
|
| 199 |
violin_img = violin_img.reshape(fig.canvas.get_width_height()[::-1] + (4,))
|
| 200 |
violin_img = violin_img[:, :, [1, 2, 3, 0]]
|
| 201 |
|
| 202 |
-
fig = sc.pl.violin(rna, 'log2FC', groupby='celltype', return_fig=True)
|
| 203 |
fig.canvas.draw()
|
| 204 |
violin_img_fc = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
|
| 205 |
violin_img_fc = violin_img_fc.reshape(fig.canvas.get_width_height()[::-1] + (4,))
|
|
|
|
| 193 |
# convert from argb to rgba
|
| 194 |
image_from_plot = image_from_plot[:, :, [1, 2, 3, 0]]
|
| 195 |
|
| 196 |
+
fig = sc.pl.violin(rna, gene, groupby='celltype', return_fig=True, show=False)
|
| 197 |
fig.canvas.draw()
|
| 198 |
violin_img = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
|
| 199 |
violin_img = violin_img.reshape(fig.canvas.get_width_height()[::-1] + (4,))
|
| 200 |
violin_img = violin_img[:, :, [1, 2, 3, 0]]
|
| 201 |
|
| 202 |
+
fig = sc.pl.violin(rna, 'log2FC', groupby='celltype', return_fig=True, show=False)
|
| 203 |
fig.canvas.draw()
|
| 204 |
violin_img_fc = np.frombuffer(fig.canvas.tostring_argb(), dtype=np.uint8)
|
| 205 |
violin_img_fc = violin_img_fc.reshape(fig.canvas.get_width_height()[::-1] + (4,))
|