dylanplummer commited on
Commit
53541a8
·
1 Parent(s): 8e3a1bc

prettify plot (hopefully)

Browse files
Files changed (1) hide show
  1. app.py +9 -2
app.py CHANGED
@@ -183,7 +183,14 @@ def perturb(gene, locus1, locus2):
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  gene_idx = gene_idx_map[gene]
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  rna.obs['ism'] = ism[:, gene_idx]
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- fig = sc.pl.umap(rna, color=["celltype", "ism"], color_map='Spectral', wspace=0.25, return_fig=True)
 
 
 
 
 
 
 
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  fig.suptitle(f'{gene} expression after removing ' + a1 + '-' + a2)
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  fig.tight_layout()
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  #fig.patch.set_facecolor('none')
@@ -223,8 +230,8 @@ with gr.Blocks(theme='WeixuanYuan/Soft_dark') as demo:
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  gr.Examples(examples=[['INS', 'chr11:2,289,895', 'chr11:2,298,840'],
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  ['INS', 'INS', 'IGF1'],
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- ['GCG', 'chr2:162,999,379', 'chr2:163,027,200'],
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  ['GCG', 'GCG', 'FAP'],
 
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  ['CEL', 'chr9:135,937,365', 'chr9:135,973,107']],
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  inputs=[in_locus, anchor1, anchor2],
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  outputs=[out_img],
 
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  gene_idx = gene_idx_map[gene]
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  rna.obs['ism'] = ism[:, gene_idx]
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+ fig = sc.pl.umap(rna,
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+ color=["celltype", "ism"],
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+ color_map='Spectral',
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+ wspace=0.15,
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+ legend_loc='on data',
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+ legend_fontoutline=2,
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+ frameon=False,
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+ return_fig=True)
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  fig.suptitle(f'{gene} expression after removing ' + a1 + '-' + a2)
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  fig.tight_layout()
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  #fig.patch.set_facecolor('none')
 
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  gr.Examples(examples=[['INS', 'chr11:2,289,895', 'chr11:2,298,840'],
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  ['INS', 'INS', 'IGF1'],
 
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  ['GCG', 'GCG', 'FAP'],
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+ ['LPP', 'chr3:188,097,749', 'chr3:197,916,262'],
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  ['CEL', 'chr9:135,937,365', 'chr9:135,973,107']],
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  inputs=[in_locus, anchor1, anchor2],
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  outputs=[out_img],