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Runtime error
Commit ·
b717bd9
1
Parent(s): c4c5be0
fix hic filepath
Browse files
app.py
CHANGED
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@@ -39,14 +39,10 @@ rna_file = hf_hub_download(repo_id="dylanplummer/islet-epigenome", filename="rna
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hic_file = hf_hub_download(repo_id="dylanplummer/islet-epigenome", filename="hic.h5ad.gz", repo_type="dataset", token=os.environ['DATASET_SECRET'])
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graph_file = hf_hub_download(repo_id="dylanplummer/islet-epigenome", filename=f"{prior_name}_prior_{resolution}_{suffix}.graphml.gz", repo_type="dataset", token=os.environ['DATASET_SECRET'])
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rna_file = unzip(rna_file)
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hic_file = unzip(
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model_file = hf_hub_download(repo_id="dylanplummer/HiGLUE-islet", filename=f"glue_hic_{prior_name}_prior_{resolution}_{suffix}.dill", repo_type="model", token=os.environ['DATASET_SECRET'])
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rna = ad.read_h5ad(rna_file)
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scglue.models.configure_dataset(rna, "NB", use_highly_variable=True, use_rep="X_pca", use_layer="counts")
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hic_file = hf_hub_download(repo_id="dylanplummer/islet-epigenome", filename="hic.h5ad.gz", repo_type="dataset", token=os.environ['DATASET_SECRET'])
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graph_file = hf_hub_download(repo_id="dylanplummer/islet-epigenome", filename=f"{prior_name}_prior_{resolution}_{suffix}.graphml.gz", repo_type="dataset", token=os.environ['DATASET_SECRET'])
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rna_file = unzip(rna_file)
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hic_file = unzip(hic_file)
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model_file = hf_hub_download(repo_id="dylanplummer/HiGLUE-islet", filename=f"glue_hic_{prior_name}_prior_{resolution}_{suffix}.dill", repo_type="model", token=os.environ['DATASET_SECRET'])
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rna = ad.read_h5ad(rna_file)
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scglue.models.configure_dataset(rna, "NB", use_highly_variable=True, use_rep="X_pca", use_layer="counts")
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