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Update app.py
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app.py
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| 1 |
+
import streamlit as st
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| 2 |
+
import pandas as pd
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| 3 |
+
from together import Together
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| 4 |
+
from dotenv import load_dotenv
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| 5 |
+
from datasets import load_dataset
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| 6 |
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import json
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| 7 |
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import re
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| 8 |
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import os
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| 9 |
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from config import DATASETS, MODELS
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| 10 |
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| 11 |
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load_dotenv()
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| 12 |
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client = Together(api_key=os.getenv('TOGETHERAI_API_KEY'))
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| 13 |
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| 14 |
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@st.cache_data
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| 15 |
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def load_dataset_by_name(dataset_name, split="train"):
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| 16 |
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dataset_config = DATASETS[dataset_name]
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| 17 |
+
dataset = load_dataset(dataset_config["loader"])
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| 18 |
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df = pd.DataFrame(dataset[split])
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| 19 |
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df = df[df['choice_type'] == 'single']
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| 20 |
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| 21 |
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questions = []
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| 22 |
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for _, row in df.iterrows():
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| 23 |
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options = [row['opa'], row['opb'], row['opc'], row['opd']]
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| 24 |
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correct_answer = options[row['cop']]
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| 25 |
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| 26 |
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question_dict = {
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| 27 |
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'question': row['question'],
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| 28 |
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'options': options,
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| 29 |
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'correct_answer': correct_answer,
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| 30 |
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'subject_name': row['subject_name'],
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| 31 |
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'topic_name': row['topic_name'],
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| 32 |
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'explanation': row['exp']
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| 33 |
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}
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| 34 |
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questions.append(question_dict)
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| 35 |
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| 36 |
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st.write(f"Loaded {len(questions)} single-select questions from {dataset_name}")
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| 37 |
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return questions
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| 38 |
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| 39 |
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def get_model_response(question, options, prompt_template, model_name):
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| 40 |
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try:
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| 41 |
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model_config = MODELS[model_name]
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| 42 |
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options_text = "\n".join([f"{chr(65+i)}. {opt}" for i, opt in enumerate(options)])
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| 43 |
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prompt = prompt_template.replace("{question}", question).replace("{options}", options_text)
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| 44 |
+
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| 45 |
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response = client.chat.completions.create(
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| 46 |
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model=model_config["model_id"],
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| 47 |
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messages=[{"role": "user", "content": prompt}]
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| 48 |
+
)
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| 49 |
+
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| 50 |
+
response_text = response.choices[0].message.content.strip()
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| 51 |
+
json_match = re.search(r'\{.*\}', response_text, re.DOTALL)
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| 52 |
+
json_response = json.loads(json_match.group(0))
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| 53 |
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answer = json_response['answer'].strip()
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| 54 |
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answer = re.sub(r'^[A-D]\.\s*', '', answer)
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| 55 |
+
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| 56 |
+
if not any(answer.lower() == opt.lower() for opt in options):
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| 57 |
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return f"Error: Answer '{answer}' does not match any options"
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| 58 |
+
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| 59 |
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return answer
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| 60 |
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| 61 |
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except Exception as e:
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| 62 |
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return f"Error: {str(e)}"
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| 63 |
+
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| 64 |
+
def evaluate_response(model_response, correct_answer):
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| 65 |
+
if model_response.startswith("Error:"):
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| 66 |
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return False
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| 67 |
+
return model_response.lower().strip() == correct_answer.lower().strip()
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| 68 |
+
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| 69 |
+
def main():
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| 70 |
+
st.set_page_config(page_title="Medical LLM Evaluation", layout="wide")
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| 71 |
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st.title("Medical LLM Evaluation")
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| 72 |
+
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| 73 |
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col1, col2 = st.columns(2)
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| 74 |
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with col1:
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| 75 |
+
selected_dataset = st.selectbox(
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| 76 |
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"Select Dataset",
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| 77 |
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options=list(DATASETS.keys()),
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| 78 |
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help="Choose the dataset to evaluate on"
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| 79 |
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)
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| 80 |
+
with col2:
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| 81 |
+
selected_model = st.selectbox(
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| 82 |
+
"Select Model",
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| 83 |
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options=list(MODELS.keys()),
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| 84 |
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help="Choose the model to evaluate"
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| 85 |
+
)
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| 86 |
+
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| 87 |
+
default_prompt = '''You are a medical AI assistant. Please answer the following multiple choice question.
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| 88 |
+
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| 89 |
+
Question: {question}
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| 90 |
+
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| 91 |
+
Options:
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| 92 |
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{options}
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| 93 |
+
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| 94 |
+
## Output Format:
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| 95 |
+
Please provide you answer in JSON format that contains an "answer" field.
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| 96 |
+
You may include any additional fields in your JSON response that you find relevant, such as:
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| 97 |
+
- "answer": the option you selected
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| 98 |
+
- "choice reasoning": your detailed reasoning
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| 99 |
+
- "elimination reasoning": why you ruled out other options
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| 100 |
+
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| 101 |
+
Example response format:
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| 102 |
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{
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| 103 |
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"answer": "exact option text here",
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| 104 |
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"choice reasoning": "your detailed reasoning here",
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| 105 |
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"elimination reasoning": "why you ruled out other options"
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| 106 |
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}
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| 107 |
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| 108 |
+
Important:
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| 109 |
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- Only the "answer" field will be used for evaluation
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| 110 |
+
- Ensure your response is in valid JSON format'''
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| 111 |
+
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| 112 |
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col1, col2 = st.columns([2, 1])
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| 113 |
+
with col1:
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| 114 |
+
prompt_template = st.text_area(
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| 115 |
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"Customize Prompt Template",
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| 116 |
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default_prompt,
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| 117 |
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height=400,
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| 118 |
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help="The below prompt is editable. Please feel free to edit it before your run."
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| 119 |
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)
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| 120 |
+
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| 121 |
+
with col2:
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| 122 |
+
st.markdown("""
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| 123 |
+
### Prompt Variables
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| 124 |
+
- `{question}`: The medical question
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| 125 |
+
- `{options}`: The multiple choice options
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| 126 |
+
""")
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| 127 |
+
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| 128 |
+
with st.spinner("Loading dataset..."):
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| 129 |
+
questions = load_dataset_by_name(selected_dataset)
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| 130 |
+
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| 131 |
+
if not questions:
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| 132 |
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st.error("No questions were loaded successfully.")
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| 133 |
+
return
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| 134 |
+
|
| 135 |
+
subjects = list(set(q['subject_name'] for q in questions))
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| 136 |
+
selected_subject = st.selectbox("Filter by subject", ["All"] + subjects)
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| 137 |
+
|
| 138 |
+
if selected_subject != "All":
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| 139 |
+
questions = [q for q in questions if q['subject_name'] == selected_subject]
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| 140 |
+
|
| 141 |
+
num_questions = st.number_input("Number of questions to evaluate", 1, len(questions))
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| 142 |
+
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| 143 |
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if st.button("Start Evaluation"):
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| 144 |
+
if not os.getenv('TOGETHERAI_API_KEY'):
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| 145 |
+
st.error("Please set the TOGETHERAI_API_KEY in your .env file")
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| 146 |
+
return
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| 147 |
+
|
| 148 |
+
progress_bar = st.progress(0)
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| 149 |
+
status_text = st.empty()
|
| 150 |
+
results_container = st.container()
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| 151 |
+
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| 152 |
+
results = []
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| 153 |
+
for i in range(num_questions):
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| 154 |
+
question = questions[i]
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| 155 |
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progress = (i + 1) / num_questions
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| 156 |
+
progress_bar.progress(progress)
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| 157 |
+
status_text.text(f"Evaluating question {i + 1}/{num_questions}")
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| 158 |
+
|
| 159 |
+
model_response = get_model_response(
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| 160 |
+
question['question'],
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| 161 |
+
question['options'],
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| 162 |
+
prompt_template,
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| 163 |
+
selected_model
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| 164 |
+
)
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| 165 |
+
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| 166 |
+
options_text = "\n".join([f"{chr(65+i)}. {opt}" for i, opt in enumerate(question['options'])])
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| 167 |
+
formatted_prompt = prompt_template.replace("{question}", question['question']).replace("{options}", options_text)
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| 168 |
+
raw_response = client.chat.completions.create(
|
| 169 |
+
model=MODELS[selected_model]["model_id"],
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| 170 |
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messages=[{"role": "user", "content": formatted_prompt}]
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| 171 |
+
).choices[0].message.content.strip()
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| 172 |
+
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| 173 |
+
is_correct = evaluate_response(model_response, question['correct_answer'])
|
| 174 |
+
|
| 175 |
+
results.append({
|
| 176 |
+
'question': question['question'],
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| 177 |
+
'options': question['options'],
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| 178 |
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'model_response': model_response,
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| 179 |
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'raw_llm_response': raw_response,
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| 180 |
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'prompt_sent': formatted_prompt,
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| 181 |
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'correct_answer': question['correct_answer'],
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| 182 |
+
'subject': question['subject_name'],
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| 183 |
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'is_correct': is_correct,
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| 184 |
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'explanation': question['explanation']
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| 185 |
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})
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| 186 |
+
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| 187 |
+
with results_container:
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| 188 |
+
st.subheader("Evaluation Results")
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| 189 |
+
df = pd.DataFrame(results)
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| 190 |
+
accuracy = df['is_correct'].mean()
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| 191 |
+
st.metric("Accuracy", f"{accuracy:.2%}")
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| 192 |
+
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| 193 |
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for idx, result in enumerate(results):
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| 194 |
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st.markdown("---")
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| 195 |
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st.subheader(f"Question {idx + 1} - {result['subject']}")
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| 196 |
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| 197 |
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st.write("Question:", result['question'])
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| 198 |
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st.write("Options:")
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| 199 |
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for i, opt in enumerate(result['options']):
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| 200 |
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st.write(f"{chr(65+i)}. {opt}")
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| 201 |
+
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| 202 |
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col1, col2 = st.columns(2)
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| 203 |
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with col1:
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| 204 |
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with st.expander("Show Prompt"):
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| 205 |
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st.code(result['prompt_sent'])
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| 206 |
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with col2:
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| 207 |
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with st.expander("Show Raw Response"):
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| 208 |
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st.code(result['raw_llm_response'])
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| 209 |
+
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| 210 |
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col1, col2 = st.columns(2)
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| 211 |
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with col1:
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| 212 |
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st.write("Correct Answer:", result['correct_answer'])
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| 213 |
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st.write("Model Answer:", result['model_response'])
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| 214 |
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with col2:
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| 215 |
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if result['is_correct']:
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| 216 |
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st.success("Correct!")
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| 217 |
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else:
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| 218 |
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st.error("Incorrect")
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| 219 |
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| 220 |
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with st.expander("Show Explanation"):
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| 221 |
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st.write(result['explanation'])
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| 222 |
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| 223 |
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if __name__ == "__main__":
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| 224 |
+
main()
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