breakpoint / features /feature_columns.json
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Update E. coli models to v3-3000 (886-feature retrain)
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["genome_id", "DEG:aac(3)-IId", "DEG:aac(3)-IIe", "DEG:aadA1", "DEG:aadA2", "DEG:aadA5", "DEG:acrF", "DEG:afaC", "DEG:air", "DEG:aph(3'')-Ib", "DEG:aph(4)-Ia", "DEG:aph(6)-Ic", "DEG:aph(6)-Id", "DEG:ariR", "DEG:arr", "DEG:astA", "DEG:bfpA", "DEG:blaCMY", "DEG:blaCTX-M", "DEG:blaEC", "DEG:blaOXA", "DEG:blaTEM", "DEG:ble", "DEG:bleO", "DEG:bmaE", "DEG:capU", "DEG:catA1", "DEG:catB3", "DEG:cif", "DEG:clbB", "DEG:clpK", "DEG:cmlA1", "DEG:cnf1", "DEG:cvaB", "DEG:cvaC", "DEG:dfrA17", "DEG:dfrA29", "DEG:dfrA7", "DEG:efa1", "DEG:eilA", "DEG:emrD", "DEG:emrE", "DEG:epeA", "DEG:ere(A)", "DEG:erm(B)", "DEG:espF", "DEG:espI", "DEG:espK", "DEG:espX1", "DEG:estX/sat2", "DEG:f17g", "DEG:fdeC", "DEG:floR", "DEG:focG", "DEG:fosA7", "DEG:hlyA-alpha", "DEG:hlyE", "DEG:hsp20", "DEG:ibeA", "DEG:iha", "DEG:ireA", "DEG:iroB", "DEG:iroC", "DEG:iroD", "DEG:iroE", "DEG:iroN", "DEG:iss", "DEG:iucA", "DEG:iucB", "DEG:iucC", "DEG:iucD", "DEG:iutA", "DEG:kefB-GI", "DEG:lpfA", "DEG:lpfA-O113", "DEG:lpfA1", "DEG:mchB", "DEG:mchF", "DEG:mdtM", "DEG:merA", "DEG:merR", "DEG:merT", "DEG:mltE", "DEG:mph(A)", "DEG:mrx(A)", "DEG:nfaE", "DEG:nleA", "DEG:nleB2", "DEG:nleC", "DEG:oqxB", "DEG:papA", "DEG:papC", "DEG:papE", "DEG:papF", "DEG:papG", "DEG:papG-II", "DEG:papG-III", "DEG:papH", "DEG:pcoA", "DEG:pcoB", "DEG:pcoC", "DEG:pcoD", "DEG:pcoR", "DEG:pcoS", "DEG:peg-344", "DEG:pic", "DEG:psi-GI", "DEG:qacE", "DEG:qepA", "DEG:qnrB", "DEG:qnrS", "DEG:rmpA2", "DEG:saa", "DEG:sat", "DEG:sat2", "DEG:senB", "DEG:sfaF", "DEG:sfaS", "DEG:shsP", "DEG:silA", "DEG:silB", "DEG:silC", "DEG:silE", "DEG:silP", "DEG:silS", "DEG:sslE", "DEG:stxA1", "DEG:sul1", "DEG:sul2", "DEG:sul3", "DEG:tccP", "DEG:terW", "DEG:tet(A)", "DEG:tet(B)", "DEG:tet(C)", "DEG:tet(M)", "DEG:trxLHR", "DEG:tsh", "DEG:vactox", "DEG:ybtP", "DEG:ybtQ", "DEG:yfdX1", "DEG:yfdX2", "POINT:acrB_R717L", "POINT:acrR_A163QfsTer11", "POINT:acrR_A40SfsTer12", "POINT:acrR_C117Ter", "POINT:acrR_D193insTer26", "POINT:acrR_D84IfsTer5", 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"POINT:parE_P439S", "POINT:parE_S458A", "POINT:parE_S458T", "POINT:pmrB_C84Y", "POINT:pmrB_V161G", "POINT:ptsI_V25I", "POINT:rpoB_H526L", "POINT:rpoB_I572F", "POINT:rpoB_P564L", "POINT:rpoB_Q513L", "POINT:rpoB_S531F", "POINT:rpsL_K43R", "POINT:soxR_G121D", "POINT:soxR_R20H", "POINT:soxS_A12S", "POINT:uhpT_A383RfsTer14", "POINT:uhpT_E350Q", "POINT:uhpT_L309AfsTer6", "POINT:uhpT_Q249Ter", "POINT:uhpT_Q66Ter", "POINT:uhpT_W164CfsTer59", "aac(2')-IIa", "aac(3)-IId", "aac(3)-IIe", "aac(3)-IIg", "aac(3)-IVa", "aac(3)-VIa", "aac(6')", "aac(6')-IIc", "aac(6')-Ia", "aac(6')-Ib", "aac(6')-Ib-cr", "aac(6')-Ib-cr5", "aac(6')-Ib3", "aac(6')-Ib4", "aac(6')-Il", "aadA1", "aadA16", "aadA2", "aadA22", "aadA31", "aadA4", "aadA5", "aadA6", "aafA", "aafB", "aafC", "aafD", "aaiC", "aap", "aar", "aatA", "acrF", "afaC", "agg3B", "agg3C", "agg3D", "agg4A", "agg4D", "agg5A", "aggA", "aggB", "aggC", "aggD", "aggR", "air", "ant(2'')-Ia", "aph(3'')-Ib", "aph(3')-IIa", "aph(3')-Ia", "aph(4)-Ia", "aph(6)-Id", "ariR", "armA", "arr", "arr-2", "arr-3", "arsA", "arsD", "arsR", "astA", "bfpA", "blaACT-56", "blaCARB-2", "blaCMY", "blaCMY-145", "blaCMY-148", "blaCMY-2", "blaCMY-42", "blaCMY-59", "blaCMY-6", "blaCMY-60", "blaCTX-M", "blaCTX-M-1", "blaCTX-M-101", "blaCTX-M-125", "blaCTX-M-127", "blaCTX-M-134", "blaCTX-M-14", "blaCTX-M-15", "blaCTX-M-174", "blaCTX-M-2", "blaCTX-M-200", "blaCTX-M-24", "blaCTX-M-269", "blaCTX-M-27", "blaCTX-M-3", "blaCTX-M-32", "blaCTX-M-35", "blaCTX-M-44", "blaCTX-M-52", "blaCTX-M-55", "blaCTX-M-64", "blaCTX-M-65", "blaCTX-M-67", "blaCTX-M-70", "blaCTX-M-8", "blaCTX-M-9", "blaDHA-1", "blaDHA-38", "blaEC", "blaEC-15", "blaEC-5", "blaHER-3", "blaIMP-1", "blaIMP-6", "blaIMP-66", "blaKPC-2", "blaKPC-3", "blaLAP-2", "blaNDM-1", "blaNDM-16b", "blaNDM-4", "blaNDM-5", "blaNDM-9", "blaOXA-1", "blaOXA-10", "blaOXA-1397", "blaOXA-181", "blaOXA-2", "blaOXA-232", "blaOXA-48", "blaSFO-1", "blaSHV-1", "blaSHV-11", "blaSHV-12", "blaSHV-27", "blaSHV-28", "blaSHV-2A", "blaTEM", "blaTEM-1", "blaTEM-12", "blaTEM-135", "blaTEM-15", "blaTEM-166", "blaTEM-19", "blaTEM-207", "blaTEM-30", "blaTEM-33", "blaTEM-34", "blaTEM-35", "blaTEM-40", "blaTEM-52", "blaTEM-57", "blaVIM-1", "ble", "bleO", "bmaE", "capU", "catA1", "catA2", "catB", "catB3", "cdtB", "cfaC", "cif", "clbB", "clbN", "clpK", "cmlA", "cmlA1", "cmlA5", "cmlA6", "cnf1", "cnf2", "cotA", "csaB", "cvaB", "cvaC", "dfrA1", "dfrA12", "dfrA14", "dfrA15", "dfrA16", "dfrA17", "dfrA19", "dfrA21", "dfrA25", "dfrA27", "dfrA29", "dfrA30", "dfrA36", "dfrA4", "dfrA5", "dfrA7", "dfrA8", "eae", "eatA", "efa1", "ehxA", "eilA", "emrD", "emrE", "epeA", "ere(A)", "erm(42)", "erm(B)", "espA", "espB", "espC", "espF", "espI", "espJ", "espK", "espP", "espX1", "estT", "estX", "estX-3", "etpD", "f17a", "f17g", "faeG", "fdeC", "fieF", "floR", "focG", "fosA", "fosA3", "fosA4", "fosA7.5", "fosA8", "hdeD-GI", "hlyA-alpha", "hsp20", "ibeA", "iha", "ireA", "iroB", "iroC", "iroD", "iroE", "iroN", "iss", "iucA", "iucB", "iucC", "iucD", "iutA", "katP", "kdeA", "kefB-GI", "lnu(F)", "lnu(G)", "lpfA", "lpfA-O113", "lpfA1", "lpfA2", "ltcA", "mchB", "mchF", "mcr-1", "mcr-1.1", "mcr-9.1", "mdtM", "mef(B)", "mef(C)", "merA", "merB", "merC", "merD", "merE", "merP", "merR", "merT", "mph(A)", "mph(B)", "mph(E)", "mph(G)", "mrx(A)", "msr(E)", "ncrA", "ncrB", "ncrC", "ncrY", "nfaE", "nleA", "nleB", "nleB2", "nleC", "oqxA", "oqxB", "oqxB25", "oqxB5", "papA", "papC", "papE", "papF", "papG", "papG-I", "papG-II", "papG-III", "papH", "pcoA", "pcoB", "pcoC", "pcoD", "pcoE", "pcoR", "pcoS", "pet", "pic", "psi-GI", "qacE", "qacEdelta1", "qacF", "qacG2", "qacL", "qepA1", "qepA4", "qepA8", "qnrA1", "qnrB", "qnrB1", "qnrB19", "qnrB2", "qnrB4", "qnrB6", "qnrB65", "qnrS", "qnrS1", "qnrS2", "qnrVC4", "rdmCL", "rhuM", "rmtB1", "rmtC", "rmtF1", "sat", "sat2", "senB", "sepA", "sfaF", "sfaS", "shsP", "sigA", "silA", "silB", "silC", "silE", "silF", "silP", "silR", "silS", "sslE", "sta1", "stb", "stx1_operon", "stx1a_operon", "stx1c_operon", "stx2a_operon", "stx2b_operon", "stx2c_operon", "stx2d_operon", "stx2e_operon", "stxA1", "stxA2", "stxB1", "stxB2", "sty4826", "subA", "subB", "sul1", "sul2", "sul3", "terA", "terB", "terC", "terD", "terE", "terW", "terZ", "tet(31)", "tet(A)", "tet(B)", "tet(C)", "tet(D)", "tet(M)", "tet(Y)", "tir", "traT", "trxLHR", "tsh", "vactox", "ybtP", "ybtQ", "yfdX1", "yfdX2"]