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import time
import ast
import gradio as gr
import io
import matplotlib.pyplot as plt
import numpy as np
from PIL import Image
from sklearn.gaussian_process import GaussianProcessRegressor
from sklearn.gaussian_process.kernels import (
DotProduct,
WhiteKernel,
ConstantKernel,
RBF,
Matern,
RationalQuadratic,
ExpSineSquared,
Kernel,
)
import logging
logging.basicConfig(
level=logging.INFO, # set minimum level to capture (DEBUG, INFO, WARNING, ERROR, CRITICAL)
format="%(asctime)s [%(levelname)s] %(message)s", # log format
)
logger = logging.getLogger("ELVIS")
from dataset import Dataset, DatasetView, get_function
@dataclass(frozen=True)
class PlotOptions:
show_training_data: bool = True
show_true_function: bool = True
show_mean_prediction: bool = True
show_prediction_interval: bool = True
def update(self, **kwargs):
return PlotOptions(
show_training_data=kwargs.get("show_training_data", self.show_training_data),
show_true_function=kwargs.get("show_true_function", self.show_true_function),
show_mean_prediction=kwargs.get("show_mean_prediction", self.show_mean_prediction),
show_prediction_interval=kwargs.get("show_prediction_interval", self.show_prediction_interval),
)
def __hash__(self):
return hash(
(
self.show_training_data,
self.show_true_function,
self.show_mean_prediction,
self.show_prediction_interval,
)
)
def eval_kernel(kernel_str) -> Kernel:
# List of allowed kernel constructors
allowed_names = {
'RBF': RBF,
'Matern': Matern,
'RationalQuadratic': RationalQuadratic,
'ExpSineSquared': ExpSineSquared,
'DotProduct': DotProduct,
'WhiteKernel': WhiteKernel,
'ConstantKernel': ConstantKernel,
}
# Parse and check the syntax safely
try:
tree = ast.parse(kernel_str, mode='eval')
except SyntaxError as e:
raise ValueError(f"Invalid syntax: {e}")
# Evaluate in restricted namespace
try:
result = eval(
compile(tree, '<string>', 'eval'),
{"__builtins__": None}, # disable access to Python builtins like open
allowed_names # only allow things in this list
)
except Exception as e:
raise ValueError(f"Error evaluating kernel: {e}")
return result
@dataclass
class ModelState:
model: GaussianProcessRegressor
kernel: str
distribution: str
def __hash__(self):
return hash(
(
self.kernel,
self.distribution,
)
)
class GpVisualizer:
def __init__(self, width, height):
self.canvas_width = width
self.canvas_height = height
self.plot_cmap = plt.get_cmap("tab20")
self.css = """
.hidden-button {
display: none;
}"""
def plot(
self,
dataset: Dataset,
model_state: ModelState,
plot_options: PlotOptions,
sample_y: bool = False,
sample_y_seed: int = 0,
) -> Image.Image:
print("Plotting")
t1 = time.time()
fig = plt.figure(figsize=(self.canvas_width / 100., self.canvas_height / 100.0), dpi=100)
# set entire figure to be the canvas to allow simple conversion of mouse
# position to coordinates in the figure
ax = fig.add_axes([0., 0., 1., 1.]) #
ax.margins(x=0, y=0) # no padding in both directions
x_train = dataset.x
y_train = dataset.y
if dataset.mode == "generate":
x_test, y_test = get_function(dataset.function, xlim=(-2, 2), nsample=100)
y_pred, y_std = model_state.model.predict(x_test, return_std=True)
elif x_train.shape[0] > 0:
x_test = np.linspace(x_train.min() - 1, x_train.max() + 1, 100).reshape(-1, 1)
y_test = None
y_pred, y_std = model_state.model.predict(x_test, return_std=True)
else:
x_test = None
y_test = None
y_pred = None
y_std = None
# plot
fig, ax = plt.subplots(figsize=(8, 8))
ax.set_title("")
ax.set_xlabel("x")
ax.set_ylabel("y")
if y_test is not None:
min_y = min(y_test.min(), (y_pred - 1.96 * y_std).min())
max_y = max(y_test.max(), (y_pred + 1.96 * y_std).max())
ax.set_ylim(min_y - 1, max_y + 1)
elif y_train.shape[0] > 0:
min_y = min(y_train.min(), (y_pred - 1.96 * y_std).min())
max_y = max(y_train.max(), (y_pred + 1.96 * y_std).max())
ax.set_ylim(min_y - 1, max_y + 1)
if plot_options.show_training_data:
plt.scatter(
x_train.flatten(),
y_train,
label='training data',
color=self.plot_cmap(0),
)
if plot_options.show_true_function and x_test is not None and y_test is not None:
plt.plot(
x_test.flatten(),
y_test,
label='true function',
color=self.plot_cmap(1),
)
if plot_options.show_mean_prediction and x_test is not None and y_pred is not None:
plt.plot(
x_test.flatten(),
y_pred,
linestyle="--",
label='mean prediction',
color=self.plot_cmap(2),
)
if plot_options.show_prediction_interval and x_test is not None and y_std is not None:
plt.fill_between(
x_test.flatten(),
y_pred - 1.96 * y_std,
y_pred + 1.96 * y_std,
color=self.plot_cmap(3),
alpha=0.2,
label='95% prediction interval',
)
if x_test is not None and sample_y:
y_sample = model_state.model.sample_y(
x_test, random_state=sample_y_seed
).flatten()
plt.plot(
x_test.flatten(),
y_sample,
linestyle=":",
label="model sample",
color=self.plot_cmap(4),
)
plt.legend()
buf = io.BytesIO()
fig.savefig(buf, format="png", bbox_inches="tight", pad_inches=0)
plt.close(fig)
buf.seek(0)
img = Image.open(buf)
plt.close(fig)
t2 = time.time()
logger.info(f"Plotting took {t2 - t1:.4f} seconds")
return img
def init_model(
self,
kernel: str,
dataset: Dataset,
distribution: str,
) -> GaussianProcessRegressor:
model = GaussianProcessRegressor(kernel=eval_kernel(kernel))
if distribution == "posterior":
if dataset.x.shape[0] > 0:
model.fit(dataset.x, dataset.y)
elif distribution != "prior":
raise ValueError(f"Unknown distribution: {distribution}")
return model
def update_dataset(
self,
dataset: Dataset,
model_state: ModelState,
plot_options: PlotOptions,
) -> tuple[ModelState, Image.Image]:
print("updating dataset")
model = self.init_model(
model_state.kernel,
dataset,
model_state.distribution,
)
model_state = ModelState(
model=model, kernel=model_state.kernel, distribution=model_state.distribution
)
new_canvas = self.plot(dataset, model_state, plot_options)
return model_state, new_canvas
def update_model(
self,
kernel_str: str,
distribution: str,
model_state: ModelState,
dataset: Dataset,
plot_options: PlotOptions,
) -> tuple[ModelState, Image.Image]:
print("updating kernel")
try:
model = self.init_model(
kernel_str,
dataset,
distribution.lower(),
)
model_state = ModelState(
model=model, kernel=kernel_str, distribution=distribution.lower()
)
except Exception as e:
logger.error(f"Error updating kernel: {e}")
gr.Info(f" ⚠️ Error updating kerne: {e}")
new_canvas = self.plot(dataset, model_state, plot_options)
return model_state, new_canvas
def sample(
self,
model_state: ModelState,
dataset: Dataset,
plot_options: PlotOptions,
) -> Image.Image:
print("sampling from model")
seed = int(time.time() * 100) % 10000
new_canvas = self.plot(
dataset,
model_state,
plot_options,
sample_y=True,
sample_y_seed=seed,
)
return new_canvas
def clear_sample(
self,
model_state: ModelState,
dataset: Dataset,
plot_options: PlotOptions,
) -> Image.Image:
print("clearing sample from model")
new_canvas = self.plot(
dataset,
model_state,
plot_options,
sample_y=False,
)
return new_canvas
def launch(self):
# build the Gradio interface
with gr.Blocks(css=self.css) as demo:
# app title
gr.HTML("<div style='text-align:left; font-size:40px; font-weight: bold;'>Gaussian Process Visualizer</div>")
# states
dataset = gr.State(Dataset())
plot_options = gr.State(PlotOptions())
kernel = "RBF() + WhiteKernel()"
model = self.init_model(kernel, dataset.value, "posterior")
model_state = gr.State(
ModelState(model=model, kernel=kernel, distribution="posterior")
)
# GUI elements and layout
with gr.Row():
with gr.Column(scale=2):
canvas = gr.Image(
value=self.plot(
dataset.value,
model_state.value,
plot_options.value,
),
# show_download_button=False,
container=True,
)
with gr.Column(scale=1):
with gr.Tab("Dataset"):
dataset_view = DatasetView()
dataset_view.build(state=dataset)
dataset.change(
fn=self.update_dataset,
inputs=[dataset, model_state, plot_options],
outputs=[model_state, canvas],
)
with gr.Tab("Model"):
kernel_box = gr.Textbox(
label="Kernel",
value=model_state.value.kernel,
interactive=True,
)
kernel_submit = gr.Button("Update Kernel")
distribution = gr.Radio(
label="Distribution",
choices=["Prior", "Posterior"],
value="Posterior",
)
kernel_box.submit(
fn=self.update_model,
inputs=[kernel_box, distribution, model_state, dataset, plot_options],
outputs=[model_state, canvas],
)
kernel_submit.click(
fn=self.update_model,
inputs=[kernel_box, distribution, model_state, dataset, plot_options],
outputs=[model_state, canvas],
)
distribution.change(
fn=self.update_model,
inputs=[kernel_box, distribution, model_state, dataset, plot_options],
outputs=[model_state, canvas],
)
sample_button = gr.Button("Sample")
clear_sample_button = gr.Button("Clear Sample")
sample_button.click(
fn=self.sample,
inputs=[model_state, dataset, plot_options],
outputs=[canvas],
)
clear_sample_button.click(
fn=self.clear_sample,
inputs=[model_state, dataset, plot_options],
outputs=[canvas],
)
with gr.Tab("Plot Options"):
show_training_data = gr.Checkbox(
label="Show Training Data",
value=True,
)
show_true_function = gr.Checkbox(
label="Show True Function",
value=True,
)
show_mean_prediction = gr.Checkbox(
label="Show Mean Prediction",
value=True,
)
show_prediction_interval = gr.Checkbox(
label="Show Prediction Interval",
value=True,
)
show_training_data.change(
fn=lambda val, options: options.update(show_training_data=val),
inputs=[show_training_data, plot_options],
outputs=[plot_options],
)
show_true_function.change(
fn=lambda val, options: options.update(show_true_function=val),
inputs=[show_true_function, plot_options],
outputs=[plot_options],
)
show_mean_prediction.change(
fn=lambda val, options: options.update(show_mean_prediction=val),
inputs=[show_mean_prediction, plot_options],
outputs=[plot_options],
)
show_prediction_interval.change(
fn=lambda val, options: options.update(show_prediction_interval=val),
inputs=[show_prediction_interval, plot_options],
outputs=[plot_options],
)
plot_options.change(
fn=self.plot,
inputs=[dataset, model_state, plot_options],
outputs=[canvas],
)
with gr.Tab("Usage"):
with open("usage.md", "r") as f:
usage_md = f.read()
gr.Markdown(usage_md)
demo.launch()
visualizer = GpVisualizer(width=1200, height=900)
visualizer.launch()
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