Upload P2 - Secom Notebook - Mercury.ipynb
Browse files- P2 - Secom Notebook - Mercury.ipynb +1422 -0
P2 - Secom Notebook - Mercury.ipynb
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|
| 1 |
+
{
|
| 2 |
+
"cells": [
|
| 3 |
+
{
|
| 4 |
+
"attachments": {},
|
| 5 |
+
"cell_type": "markdown",
|
| 6 |
+
"metadata": {
|
| 7 |
+
"slideshow": {
|
| 8 |
+
"slide_type": "skip"
|
| 9 |
+
}
|
| 10 |
+
},
|
| 11 |
+
"source": [
|
| 12 |
+
"# **Classifying products in Semiconductor Industry**"
|
| 13 |
+
]
|
| 14 |
+
},
|
| 15 |
+
{
|
| 16 |
+
"attachments": {},
|
| 17 |
+
"cell_type": "markdown",
|
| 18 |
+
"metadata": {
|
| 19 |
+
"slideshow": {
|
| 20 |
+
"slide_type": "skip"
|
| 21 |
+
}
|
| 22 |
+
},
|
| 23 |
+
"source": [
|
| 24 |
+
"#### **Import the data**"
|
| 25 |
+
]
|
| 26 |
+
},
|
| 27 |
+
{
|
| 28 |
+
"cell_type": "code",
|
| 29 |
+
"execution_count": 1,
|
| 30 |
+
"metadata": {
|
| 31 |
+
"slideshow": {
|
| 32 |
+
"slide_type": "skip"
|
| 33 |
+
}
|
| 34 |
+
},
|
| 35 |
+
"outputs": [],
|
| 36 |
+
"source": [
|
| 37 |
+
"# import pandas for data manipulation\n",
|
| 38 |
+
"# import numpy for numerical computation\n",
|
| 39 |
+
"# import seaborn for data visualization\n",
|
| 40 |
+
"# import matplotlib for data visualization\n",
|
| 41 |
+
"# import stats for statistical analysis\n",
|
| 42 |
+
"# import train_test_split for splitting data into training and testing sets\n",
|
| 43 |
+
"\n",
|
| 44 |
+
"\n",
|
| 45 |
+
"import pandas as pd\n",
|
| 46 |
+
"import numpy as np\n",
|
| 47 |
+
"import seaborn as sns\n",
|
| 48 |
+
"import matplotlib.pyplot as plt\n",
|
| 49 |
+
"from scipy import stats\n",
|
| 50 |
+
"from sklearn.model_selection import train_test_split\n",
|
| 51 |
+
"import mercury as mr"
|
| 52 |
+
]
|
| 53 |
+
},
|
| 54 |
+
{
|
| 55 |
+
"cell_type": "code",
|
| 56 |
+
"execution_count": 2,
|
| 57 |
+
"metadata": {
|
| 58 |
+
"slideshow": {
|
| 59 |
+
"slide_type": "skip"
|
| 60 |
+
}
|
| 61 |
+
},
|
| 62 |
+
"outputs": [
|
| 63 |
+
{
|
| 64 |
+
"data": {
|
| 65 |
+
"application/mercury+json": {
|
| 66 |
+
"allow_download": true,
|
| 67 |
+
"code_uid": "App.0.40.24.1-randc1b961c9",
|
| 68 |
+
"continuous_update": false,
|
| 69 |
+
"description": "Recumpute everything dynamically",
|
| 70 |
+
"full_screen": true,
|
| 71 |
+
"model_id": "mercury-app",
|
| 72 |
+
"notify": "{}",
|
| 73 |
+
"output": "app",
|
| 74 |
+
"schedule": "",
|
| 75 |
+
"show_code": false,
|
| 76 |
+
"show_prompt": false,
|
| 77 |
+
"show_sidebar": true,
|
| 78 |
+
"static_notebook": false,
|
| 79 |
+
"title": "Secom Web App Demo",
|
| 80 |
+
"widget": "App"
|
| 81 |
+
},
|
| 82 |
+
"text/html": [
|
| 83 |
+
"<h3>Mercury Application</h3><small>This output won't appear in the web app.</small>"
|
| 84 |
+
],
|
| 85 |
+
"text/plain": [
|
| 86 |
+
"mercury.App"
|
| 87 |
+
]
|
| 88 |
+
},
|
| 89 |
+
"metadata": {},
|
| 90 |
+
"output_type": "display_data"
|
| 91 |
+
}
|
| 92 |
+
],
|
| 93 |
+
"source": [
|
| 94 |
+
"app = mr.App(title=\"Secom Web App Demo\", description=\"Recumpute everything dynamically\", continuous_update=False)"
|
| 95 |
+
]
|
| 96 |
+
},
|
| 97 |
+
{
|
| 98 |
+
"cell_type": "code",
|
| 99 |
+
"execution_count": 3,
|
| 100 |
+
"metadata": {
|
| 101 |
+
"slideshow": {
|
| 102 |
+
"slide_type": "skip"
|
| 103 |
+
}
|
| 104 |
+
},
|
| 105 |
+
"outputs": [],
|
| 106 |
+
"source": [
|
| 107 |
+
"# Read the features data from the the url of csv into pandas dataframes and rename the columns to F1, F2, F3, etc.\n",
|
| 108 |
+
"# Read the labels data from the url of csv into pandas dataframes and rename the columns to pass/fail and date/time\n",
|
| 109 |
+
"\n",
|
| 110 |
+
"#url_data = 'https://archive.ics.uci.edu/ml/machine-learning-databases/secom/secom.data'\n",
|
| 111 |
+
"#url_labels = 'https://archive.ics.uci.edu/ml/machine-learning-databases/secom/secom_labels.data'\n",
|
| 112 |
+
"\n",
|
| 113 |
+
"url_data = '..\\Dataset\\secom_data.csv'\n",
|
| 114 |
+
"url_labels = '..\\Dataset\\secom_labels.csv'\n",
|
| 115 |
+
"\n",
|
| 116 |
+
"features = pd.read_csv(url_data, delimiter=' ', header=None)\n",
|
| 117 |
+
"labels = pd.read_csv(url_labels, delimiter=' ', names=['pass/fail', 'date_time'])\n",
|
| 118 |
+
"\n",
|
| 119 |
+
"prefix = 'F'\n",
|
| 120 |
+
"new_column_names = [prefix + str(i) for i in range(1, len(features.columns)+1)]\n",
|
| 121 |
+
"features.columns = new_column_names\n",
|
| 122 |
+
"\n",
|
| 123 |
+
"labels['pass/fail'] = labels['pass/fail'].replace({-1: 0, 1: 1})\n"
|
| 124 |
+
]
|
| 125 |
+
},
|
| 126 |
+
{
|
| 127 |
+
"attachments": {},
|
| 128 |
+
"cell_type": "markdown",
|
| 129 |
+
"metadata": {
|
| 130 |
+
"slideshow": {
|
| 131 |
+
"slide_type": "skip"
|
| 132 |
+
}
|
| 133 |
+
},
|
| 134 |
+
"source": [
|
| 135 |
+
"#### **Split the data**"
|
| 136 |
+
]
|
| 137 |
+
},
|
| 138 |
+
{
|
| 139 |
+
"cell_type": "code",
|
| 140 |
+
"execution_count": 4,
|
| 141 |
+
"metadata": {
|
| 142 |
+
"slideshow": {
|
| 143 |
+
"slide_type": "skip"
|
| 144 |
+
}
|
| 145 |
+
},
|
| 146 |
+
"outputs": [
|
| 147 |
+
{
|
| 148 |
+
"name": "stdout",
|
| 149 |
+
"output_type": "stream",
|
| 150 |
+
"text": [
|
| 151 |
+
"Dropped date/time column from labels dataframe\n"
|
| 152 |
+
]
|
| 153 |
+
}
|
| 154 |
+
],
|
| 155 |
+
"source": [
|
| 156 |
+
"# if there is a date/time column, drop it from the features and labels dataframes, else continue\n",
|
| 157 |
+
"\n",
|
| 158 |
+
"if 'date_time' in labels.columns:\n",
|
| 159 |
+
" labels = labels.drop(['date_time'], axis=1)\n",
|
| 160 |
+
" print('Dropped date/time column from labels dataframe')\n",
|
| 161 |
+
"\n",
|
| 162 |
+
"\n",
|
| 163 |
+
"# Split the dataset and the labels into training and testing sets\n",
|
| 164 |
+
"# use stratify to ensure that the training and testing sets have the same percentage of pass and fail labels\n",
|
| 165 |
+
"# use random_state to ensure that the same random split is generated each time the code is run\n",
|
| 166 |
+
"\n",
|
| 167 |
+
"\n",
|
| 168 |
+
"X_train, X_test, y_train, y_test = train_test_split(features, labels, test_size=0.25, stratify=labels, random_state=13)"
|
| 169 |
+
]
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"attachments": {},
|
| 173 |
+
"cell_type": "markdown",
|
| 174 |
+
"metadata": {
|
| 175 |
+
"slideshow": {
|
| 176 |
+
"slide_type": "skip"
|
| 177 |
+
}
|
| 178 |
+
},
|
| 179 |
+
"source": [
|
| 180 |
+
"### **Functions**"
|
| 181 |
+
]
|
| 182 |
+
},
|
| 183 |
+
{
|
| 184 |
+
"attachments": {},
|
| 185 |
+
"cell_type": "markdown",
|
| 186 |
+
"metadata": {
|
| 187 |
+
"slideshow": {
|
| 188 |
+
"slide_type": "skip"
|
| 189 |
+
}
|
| 190 |
+
},
|
| 191 |
+
"source": [
|
| 192 |
+
"#### **Feature Removal**"
|
| 193 |
+
]
|
| 194 |
+
},
|
| 195 |
+
{
|
| 196 |
+
"cell_type": "code",
|
| 197 |
+
"execution_count": 5,
|
| 198 |
+
"metadata": {
|
| 199 |
+
"slideshow": {
|
| 200 |
+
"slide_type": "skip"
|
| 201 |
+
}
|
| 202 |
+
},
|
| 203 |
+
"outputs": [],
|
| 204 |
+
"source": [
|
| 205 |
+
"def columns_to_drop(df,drop_duplicates='yes', missing_values_threshold=100, variance_threshold=0, \n",
|
| 206 |
+
" correlation_threshold=1.1):\n",
|
| 207 |
+
" \n",
|
| 208 |
+
" print('Shape of the dataframe is: ', df.shape)\n",
|
| 209 |
+
"\n",
|
| 210 |
+
" # Drop duplicated columns\n",
|
| 211 |
+
" if drop_duplicates == 'yes':\n",
|
| 212 |
+
" new_column_names = df.columns\n",
|
| 213 |
+
" df = df.T.drop_duplicates().T\n",
|
| 214 |
+
" print('the number of columns to be dropped due to duplications is: ', len(new_column_names) - len(df.columns))\n",
|
| 215 |
+
" drop_duplicated = list(set(new_column_names) - set(df.columns))\n",
|
| 216 |
+
"\n",
|
| 217 |
+
" elif drop_duplicates == 'no':\n",
|
| 218 |
+
" df = df.T.T\n",
|
| 219 |
+
" print('No columns were dropped due to duplications') \n",
|
| 220 |
+
"\n",
|
| 221 |
+
" # Print the percentage of columns in df with missing values more than or equal to threshold\n",
|
| 222 |
+
" print('the number of columns to be dropped due to missing values is: ', len(df.isnull().mean()[df.isnull().mean() > missing_values_threshold/100].index))\n",
|
| 223 |
+
" \n",
|
| 224 |
+
" # Print into a list the columns to be dropped due to missing values\n",
|
| 225 |
+
" drop_missing = list(df.isnull().mean()[df.isnull().mean() > missing_values_threshold/100].index)\n",
|
| 226 |
+
"\n",
|
| 227 |
+
" # Drop columns with more than or equal to threshold missing values from df\n",
|
| 228 |
+
" df.drop(drop_missing, axis=1, inplace=True)\n",
|
| 229 |
+
" \n",
|
| 230 |
+
" # Print the number of columns in df with variance less than threshold\n",
|
| 231 |
+
" print('the number of columns to be dropped due to low variance is: ', len(df.var()[df.var() <= variance_threshold].index))\n",
|
| 232 |
+
"\n",
|
| 233 |
+
" # Print into a list the columns to be dropped due to low variance\n",
|
| 234 |
+
" drop_variance = list(df.var()[df.var() <= variance_threshold].index)\n",
|
| 235 |
+
"\n",
|
| 236 |
+
" # Drop columns with more than or equal to threshold variance from df\n",
|
| 237 |
+
" df.drop(drop_variance, axis=1, inplace=True)\n",
|
| 238 |
+
"\n",
|
| 239 |
+
" # Print the number of columns in df with more than or equal to threshold correlation\n",
|
| 240 |
+
" \n",
|
| 241 |
+
" # Create correlation matrix and round it to 4 decimal places\n",
|
| 242 |
+
" corr_matrix = df.corr().abs().round(4)\n",
|
| 243 |
+
" upper = corr_matrix.where(np.triu(np.ones(corr_matrix.shape), k=1).astype(bool))\n",
|
| 244 |
+
" to_drop = [column for column in upper.columns if any(upper[column] >= correlation_threshold)]\n",
|
| 245 |
+
" print('the number of columns to be dropped due to high correlation is: ', len(to_drop))\n",
|
| 246 |
+
"\n",
|
| 247 |
+
" # Print into a list the columns to be dropped due to high correlation\n",
|
| 248 |
+
" drop_correlation = [column for column in upper.columns if any(upper[column] >= correlation_threshold)]\n",
|
| 249 |
+
"\n",
|
| 250 |
+
" # Drop columns with more than or equal to threshold correlation from df\n",
|
| 251 |
+
" df.drop(to_drop, axis=1, inplace=True)\n",
|
| 252 |
+
" \n",
|
| 253 |
+
" if drop_duplicates == 'yes':\n",
|
| 254 |
+
" dropped = (drop_duplicated+drop_missing+drop_variance+drop_correlation)\n",
|
| 255 |
+
"\n",
|
| 256 |
+
" elif drop_duplicates =='no':\n",
|
| 257 |
+
" dropped = (drop_missing+drop_variance+drop_correlation)\n",
|
| 258 |
+
" \n",
|
| 259 |
+
" print('Total number of columns to be dropped is: ', len(dropped))\n",
|
| 260 |
+
" print('New shape of the dataframe is: ', df.shape)\n",
|
| 261 |
+
"\n",
|
| 262 |
+
" global drop_duplicates_var\n",
|
| 263 |
+
" drop_duplicates_var = drop_duplicates\n",
|
| 264 |
+
" \n",
|
| 265 |
+
" global missing_values_threshold_var\n",
|
| 266 |
+
" missing_values_threshold_var = missing_values_threshold\n",
|
| 267 |
+
"\n",
|
| 268 |
+
" global variance_threshold_var\n",
|
| 269 |
+
" variance_threshold_var = variance_threshold\n",
|
| 270 |
+
"\n",
|
| 271 |
+
" global correlation_threshold_var\n",
|
| 272 |
+
" correlation_threshold_var = correlation_threshold\n",
|
| 273 |
+
" \n",
|
| 274 |
+
" print(type(dropped))\n",
|
| 275 |
+
" return dropped"
|
| 276 |
+
]
|
| 277 |
+
},
|
| 278 |
+
{
|
| 279 |
+
"attachments": {},
|
| 280 |
+
"cell_type": "markdown",
|
| 281 |
+
"metadata": {
|
| 282 |
+
"slideshow": {
|
| 283 |
+
"slide_type": "skip"
|
| 284 |
+
}
|
| 285 |
+
},
|
| 286 |
+
"source": [
|
| 287 |
+
"#### **Outlier Removal**"
|
| 288 |
+
]
|
| 289 |
+
},
|
| 290 |
+
{
|
| 291 |
+
"cell_type": "code",
|
| 292 |
+
"execution_count": 6,
|
| 293 |
+
"metadata": {
|
| 294 |
+
"slideshow": {
|
| 295 |
+
"slide_type": "skip"
|
| 296 |
+
}
|
| 297 |
+
},
|
| 298 |
+
"outputs": [],
|
| 299 |
+
"source": [
|
| 300 |
+
"def outlier_removal(z_df, z_threshold=4):\n",
|
| 301 |
+
" \n",
|
| 302 |
+
" global outlier_var\n",
|
| 303 |
+
"\n",
|
| 304 |
+
" if z_threshold == 'none':\n",
|
| 305 |
+
" print('No outliers were removed')\n",
|
| 306 |
+
" outlier_var = 'none'\n",
|
| 307 |
+
" return z_df\n",
|
| 308 |
+
" \n",
|
| 309 |
+
" else:\n",
|
| 310 |
+
" print('The z-score threshold is:', z_threshold)\n",
|
| 311 |
+
"\n",
|
| 312 |
+
" z_df_copy = z_df.copy()\n",
|
| 313 |
+
"\n",
|
| 314 |
+
" z_scores = np.abs(stats.zscore(z_df_copy))\n",
|
| 315 |
+
"\n",
|
| 316 |
+
" # Identify the outliers in the dataset using the z-score method\n",
|
| 317 |
+
" outliers_mask = z_scores > z_threshold\n",
|
| 318 |
+
" z_df_copy[outliers_mask] = np.nan\n",
|
| 319 |
+
"\n",
|
| 320 |
+
" outliers_count = np.count_nonzero(outliers_mask)\n",
|
| 321 |
+
" print('The number of outliers in the whole dataset is / was:', outliers_count)\n",
|
| 322 |
+
"\n",
|
| 323 |
+
" outlier_var = z_threshold\n",
|
| 324 |
+
"\n",
|
| 325 |
+
" print(type(z_df_copy))\n",
|
| 326 |
+
" return z_df_copy"
|
| 327 |
+
]
|
| 328 |
+
},
|
| 329 |
+
{
|
| 330 |
+
"attachments": {},
|
| 331 |
+
"cell_type": "markdown",
|
| 332 |
+
"metadata": {
|
| 333 |
+
"slideshow": {
|
| 334 |
+
"slide_type": "skip"
|
| 335 |
+
}
|
| 336 |
+
},
|
| 337 |
+
"source": [
|
| 338 |
+
"#### **Scaling Methods**"
|
| 339 |
+
]
|
| 340 |
+
},
|
| 341 |
+
{
|
| 342 |
+
"cell_type": "code",
|
| 343 |
+
"execution_count": 7,
|
| 344 |
+
"metadata": {
|
| 345 |
+
"slideshow": {
|
| 346 |
+
"slide_type": "skip"
|
| 347 |
+
}
|
| 348 |
+
},
|
| 349 |
+
"outputs": [],
|
| 350 |
+
"source": [
|
| 351 |
+
"# define a function to scale the dataframe using different scaling models\n",
|
| 352 |
+
"\n",
|
| 353 |
+
"def scale_dataframe(scale_model,df_fit, df_transform):\n",
|
| 354 |
+
" \n",
|
| 355 |
+
" global scale_model_var\n",
|
| 356 |
+
"\n",
|
| 357 |
+
" if scale_model == 'robust':\n",
|
| 358 |
+
" from sklearn.preprocessing import RobustScaler\n",
|
| 359 |
+
" scaler = RobustScaler()\n",
|
| 360 |
+
" scaler.fit(df_fit)\n",
|
| 361 |
+
" df_scaled = scaler.transform(df_transform)\n",
|
| 362 |
+
" df_scaled = pd.DataFrame(df_scaled, columns=df_transform.columns)\n",
|
| 363 |
+
" print('The dataframe has been scaled using the robust scaling model')\n",
|
| 364 |
+
" scale_model_var = 'robust'\n",
|
| 365 |
+
" return df_scaled\n",
|
| 366 |
+
" \n",
|
| 367 |
+
" elif scale_model == 'standard':\n",
|
| 368 |
+
" from sklearn.preprocessing import StandardScaler\n",
|
| 369 |
+
" scaler = StandardScaler()\n",
|
| 370 |
+
" scaler.fit(df_fit)\n",
|
| 371 |
+
" df_scaled = scaler.transform(df_transform)\n",
|
| 372 |
+
" df_scaled = pd.DataFrame(df_scaled, columns=df_transform.columns)\n",
|
| 373 |
+
" print('The dataframe has been scaled using the standard scaling model')\n",
|
| 374 |
+
" scale_model_var = 'standard'\n",
|
| 375 |
+
" return df_scaled\n",
|
| 376 |
+
" \n",
|
| 377 |
+
" elif scale_model == 'normal':\n",
|
| 378 |
+
" from sklearn.preprocessing import Normalizer\n",
|
| 379 |
+
" scaler = Normalizer()\n",
|
| 380 |
+
" scaler.fit(df_fit)\n",
|
| 381 |
+
" df_scaled = scaler.transform(df_transform)\n",
|
| 382 |
+
" df_scaled = pd.DataFrame(df_scaled, columns=df_transform.columns)\n",
|
| 383 |
+
" print('The dataframe has been scaled using the normal scaling model')\n",
|
| 384 |
+
" scale_model_var = 'normal'\n",
|
| 385 |
+
" return df_scaled\n",
|
| 386 |
+
" \n",
|
| 387 |
+
" elif scale_model == 'minmax':\n",
|
| 388 |
+
" from sklearn.preprocessing import MinMaxScaler\n",
|
| 389 |
+
" scaler = MinMaxScaler()\n",
|
| 390 |
+
" scaler.fit(df_fit)\n",
|
| 391 |
+
" df_scaled = scaler.transform(df_transform)\n",
|
| 392 |
+
" df_scaled = pd.DataFrame(df_scaled, columns=df_transform.columns)\n",
|
| 393 |
+
" print('The dataframe has been scaled using the minmax scaling model')\n",
|
| 394 |
+
" scale_model_var = 'minmax'\n",
|
| 395 |
+
" return df_scaled\n",
|
| 396 |
+
" \n",
|
| 397 |
+
" elif scale_model == 'none':\n",
|
| 398 |
+
" print('The dataframe has not been scaled')\n",
|
| 399 |
+
" scale_model_var = 'none'\n",
|
| 400 |
+
" return df_transform\n",
|
| 401 |
+
" \n",
|
| 402 |
+
" else:\n",
|
| 403 |
+
" print('Please choose a valid scaling model: robust, standard, normal, or minmax')\n",
|
| 404 |
+
" return None"
|
| 405 |
+
]
|
| 406 |
+
},
|
| 407 |
+
{
|
| 408 |
+
"attachments": {},
|
| 409 |
+
"cell_type": "markdown",
|
| 410 |
+
"metadata": {
|
| 411 |
+
"slideshow": {
|
| 412 |
+
"slide_type": "skip"
|
| 413 |
+
}
|
| 414 |
+
},
|
| 415 |
+
"source": [
|
| 416 |
+
"#### **Missing Value Imputation**"
|
| 417 |
+
]
|
| 418 |
+
},
|
| 419 |
+
{
|
| 420 |
+
"cell_type": "code",
|
| 421 |
+
"execution_count": 8,
|
| 422 |
+
"metadata": {
|
| 423 |
+
"slideshow": {
|
| 424 |
+
"slide_type": "skip"
|
| 425 |
+
}
|
| 426 |
+
},
|
| 427 |
+
"outputs": [],
|
| 428 |
+
"source": [
|
| 429 |
+
"# define a function to impute missing values using different imputation models\n",
|
| 430 |
+
"\n",
|
| 431 |
+
"def impute_missing_values(imputation, df_fit, df_transform, n_neighbors=5):\n",
|
| 432 |
+
"\n",
|
| 433 |
+
" print('Number of missing values before imputation: ', df_transform.isnull().sum().sum())\n",
|
| 434 |
+
"\n",
|
| 435 |
+
" global imputation_var\n",
|
| 436 |
+
"\n",
|
| 437 |
+
" if imputation == 'knn':\n",
|
| 438 |
+
"\n",
|
| 439 |
+
" from sklearn.impute import KNNImputer\n",
|
| 440 |
+
" imputer = KNNImputer(n_neighbors=n_neighbors)\n",
|
| 441 |
+
" imputer.fit(df_fit)\n",
|
| 442 |
+
" df_imputed = imputer.transform(df_transform)\n",
|
| 443 |
+
" df_imputed = pd.DataFrame(df_imputed, columns=df_transform.columns)\n",
|
| 444 |
+
" print('Number of missing values after imputation: ', df_imputed.isnull().sum().sum())\n",
|
| 445 |
+
" imputation_var = 'knn'\n",
|
| 446 |
+
" return df_imputed\n",
|
| 447 |
+
" \n",
|
| 448 |
+
" elif imputation == 'mean':\n",
|
| 449 |
+
"\n",
|
| 450 |
+
" from sklearn.impute import SimpleImputer\n",
|
| 451 |
+
" imputer = SimpleImputer(strategy='mean')\n",
|
| 452 |
+
" imputer.fit(df_fit)\n",
|
| 453 |
+
" df_imputed = imputer.transform(df_transform)\n",
|
| 454 |
+
" df_imputed = pd.DataFrame(df_imputed, columns=df_transform.columns)\n",
|
| 455 |
+
" print('Number of missing values after imputation: ', df_imputed.isnull().sum().sum())\n",
|
| 456 |
+
" imputation_var = 'mean'\n",
|
| 457 |
+
" return df_imputed\n",
|
| 458 |
+
" \n",
|
| 459 |
+
" elif imputation == 'median':\n",
|
| 460 |
+
"\n",
|
| 461 |
+
" from sklearn.impute import SimpleImputer\n",
|
| 462 |
+
" imputer = SimpleImputer(strategy='median')\n",
|
| 463 |
+
" imputer.fit(df_fit)\n",
|
| 464 |
+
" df_imputed = imputer.transform(df_transform)\n",
|
| 465 |
+
" df_imputed = pd.DataFrame(df_imputed, columns=df_transform.columns)\n",
|
| 466 |
+
" print('Number of missing values after imputation: ', df_imputed.isnull().sum().sum())\n",
|
| 467 |
+
" imputation_var = 'median'\n",
|
| 468 |
+
" return df_imputed\n",
|
| 469 |
+
" \n",
|
| 470 |
+
" elif imputation == 'most_frequent':\n",
|
| 471 |
+
" \n",
|
| 472 |
+
" from sklearn.impute import SimpleImputer\n",
|
| 473 |
+
" imputer = SimpleImputer(strategy='most_frequent')\n",
|
| 474 |
+
" imputer.fit(df_fit)\n",
|
| 475 |
+
" df_imputed = imputer.transform(df_transform)\n",
|
| 476 |
+
" df_imputed = pd.DataFrame(df_imputed, columns=df_transform.columns)\n",
|
| 477 |
+
" print('Number of missing values after imputation: ', df_imputed.isnull().sum().sum())\n",
|
| 478 |
+
" imputation_var = 'most_frequent'\n",
|
| 479 |
+
" return df_imputed\n",
|
| 480 |
+
" \n",
|
| 481 |
+
" else:\n",
|
| 482 |
+
" print('Please choose an imputation model from the following: knn, mean, median, most_frequent')\n",
|
| 483 |
+
" df_imputed = df_transform.copy()\n",
|
| 484 |
+
" return df_imputed\n"
|
| 485 |
+
]
|
| 486 |
+
},
|
| 487 |
+
{
|
| 488 |
+
"attachments": {},
|
| 489 |
+
"cell_type": "markdown",
|
| 490 |
+
"metadata": {
|
| 491 |
+
"slideshow": {
|
| 492 |
+
"slide_type": "skip"
|
| 493 |
+
}
|
| 494 |
+
},
|
| 495 |
+
"source": [
|
| 496 |
+
"#### **Imbalance Treatment**"
|
| 497 |
+
]
|
| 498 |
+
},
|
| 499 |
+
{
|
| 500 |
+
"cell_type": "code",
|
| 501 |
+
"execution_count": 9,
|
| 502 |
+
"metadata": {
|
| 503 |
+
"slideshow": {
|
| 504 |
+
"slide_type": "skip"
|
| 505 |
+
}
|
| 506 |
+
},
|
| 507 |
+
"outputs": [],
|
| 508 |
+
"source": [
|
| 509 |
+
"#define a function to oversample and understamble the imbalance in the training set\n",
|
| 510 |
+
"\n",
|
| 511 |
+
"def imbalance_treatment(method, X_train, y_train):\n",
|
| 512 |
+
"\n",
|
| 513 |
+
" global imbalance_var\n",
|
| 514 |
+
"\n",
|
| 515 |
+
" if method == 'smote': \n",
|
| 516 |
+
" from imblearn.over_sampling import SMOTE\n",
|
| 517 |
+
" sm = SMOTE(random_state=42)\n",
|
| 518 |
+
" X_train_res, y_train_res = sm.fit_resample(X_train, y_train)\n",
|
| 519 |
+
" print('Shape of the training set after oversampling with SMOTE: ', X_train_res.shape)\n",
|
| 520 |
+
" print('Value counts of the target variable after oversampling with SMOTE: \\n', y_train_res.value_counts())\n",
|
| 521 |
+
" imbalance_var = 'smote'\n",
|
| 522 |
+
" return X_train_res, y_train_res\n",
|
| 523 |
+
" \n",
|
| 524 |
+
" if method == 'undersampling':\n",
|
| 525 |
+
" from imblearn.under_sampling import RandomUnderSampler\n",
|
| 526 |
+
" rus = RandomUnderSampler(random_state=42)\n",
|
| 527 |
+
" X_train_res, y_train_res = rus.fit_resample(X_train, y_train)\n",
|
| 528 |
+
" print('Shape of the training set after undersampling with RandomUnderSampler: ', X_train_res.shape)\n",
|
| 529 |
+
" print('Value counts of the target variable after undersampling with RandomUnderSampler: \\n', y_train_res.value_counts())\n",
|
| 530 |
+
" imbalance_var = 'random_undersampling'\n",
|
| 531 |
+
" return X_train_res, y_train_res\n",
|
| 532 |
+
" \n",
|
| 533 |
+
" if method == 'rose':\n",
|
| 534 |
+
" from imblearn.over_sampling import RandomOverSampler\n",
|
| 535 |
+
" ros = RandomOverSampler(random_state=42)\n",
|
| 536 |
+
" X_train_res, y_train_res = ros.fit_resample(X_train, y_train)\n",
|
| 537 |
+
" print('Shape of the training set after oversampling with RandomOverSampler: ', X_train_res.shape)\n",
|
| 538 |
+
" print('Value counts of the target variable after oversampling with RandomOverSampler: \\n', y_train_res.value_counts())\n",
|
| 539 |
+
" imbalance_var = 'rose'\n",
|
| 540 |
+
" return X_train_res, y_train_res\n",
|
| 541 |
+
" \n",
|
| 542 |
+
" \n",
|
| 543 |
+
" if method == 'none':\n",
|
| 544 |
+
" X_train_res = X_train\n",
|
| 545 |
+
" y_train_res = y_train\n",
|
| 546 |
+
" print('Shape of the training set after no resampling: ', X_train_res.shape)\n",
|
| 547 |
+
" print('Value counts of the target variable after no resampling: \\n', y_train_res.value_counts())\n",
|
| 548 |
+
" imbalance_var = 'none'\n",
|
| 549 |
+
" return X_train_res, y_train_res\n",
|
| 550 |
+
" \n",
|
| 551 |
+
" else:\n",
|
| 552 |
+
" print('Please choose a valid resampling method: smote, rose, undersampling or none')\n",
|
| 553 |
+
" X_train_res = X_train\n",
|
| 554 |
+
" y_train_res = y_train\n",
|
| 555 |
+
" return X_train_res, y_train_res"
|
| 556 |
+
]
|
| 557 |
+
},
|
| 558 |
+
{
|
| 559 |
+
"attachments": {},
|
| 560 |
+
"cell_type": "markdown",
|
| 561 |
+
"metadata": {
|
| 562 |
+
"slideshow": {
|
| 563 |
+
"slide_type": "skip"
|
| 564 |
+
}
|
| 565 |
+
},
|
| 566 |
+
"source": [
|
| 567 |
+
"#### **Training Models**"
|
| 568 |
+
]
|
| 569 |
+
},
|
| 570 |
+
{
|
| 571 |
+
"cell_type": "code",
|
| 572 |
+
"execution_count": 10,
|
| 573 |
+
"metadata": {
|
| 574 |
+
"slideshow": {
|
| 575 |
+
"slide_type": "skip"
|
| 576 |
+
}
|
| 577 |
+
},
|
| 578 |
+
"outputs": [],
|
| 579 |
+
"source": [
|
| 580 |
+
"# define a function where you can choose the model you want to use to train the data\n",
|
| 581 |
+
"\n",
|
| 582 |
+
"def train_model(model, X_train, y_train, X_test, y_test):\n",
|
| 583 |
+
"\n",
|
| 584 |
+
" global model_var\n",
|
| 585 |
+
"\n",
|
| 586 |
+
" if model == 'random_forest':\n",
|
| 587 |
+
" from sklearn.ensemble import RandomForestClassifier\n",
|
| 588 |
+
" rfc = RandomForestClassifier(n_estimators=100, random_state=13)\n",
|
| 589 |
+
" rfc.fit(X_train, y_train)\n",
|
| 590 |
+
" y_pred = rfc.predict(X_test)\n",
|
| 591 |
+
" model_var = 'random_forest'\n",
|
| 592 |
+
" return y_pred\n",
|
| 593 |
+
"\n",
|
| 594 |
+
" if model == 'logistic_regression':\n",
|
| 595 |
+
" from sklearn.linear_model import LogisticRegression\n",
|
| 596 |
+
" lr = LogisticRegression()\n",
|
| 597 |
+
" lr.fit(X_train, y_train)\n",
|
| 598 |
+
" y_pred = lr.predict(X_test)\n",
|
| 599 |
+
" model_var = 'logistic_regression'\n",
|
| 600 |
+
" return y_pred\n",
|
| 601 |
+
" \n",
|
| 602 |
+
" if model == 'knn':\n",
|
| 603 |
+
" from sklearn.neighbors import KNeighborsClassifier\n",
|
| 604 |
+
" knn = KNeighborsClassifier(n_neighbors=5)\n",
|
| 605 |
+
" knn.fit(X_train, y_train)\n",
|
| 606 |
+
" y_pred = knn.predict(X_test)\n",
|
| 607 |
+
" model_var = 'knn'\n",
|
| 608 |
+
" return y_pred\n",
|
| 609 |
+
" \n",
|
| 610 |
+
" if model == 'svm':\n",
|
| 611 |
+
" from sklearn.svm import SVC\n",
|
| 612 |
+
" svm = SVC()\n",
|
| 613 |
+
" svm.fit(X_train, y_train)\n",
|
| 614 |
+
" y_pred = svm.predict(X_test)\n",
|
| 615 |
+
" model_var = 'svm'\n",
|
| 616 |
+
" return y_pred\n",
|
| 617 |
+
" \n",
|
| 618 |
+
" if model == 'naive_bayes':\n",
|
| 619 |
+
" from sklearn.naive_bayes import GaussianNB\n",
|
| 620 |
+
" nb = GaussianNB()\n",
|
| 621 |
+
" nb.fit(X_train, y_train)\n",
|
| 622 |
+
" y_pred = nb.predict(X_test)\n",
|
| 623 |
+
" model_var = 'naive_bayes'\n",
|
| 624 |
+
" return y_pred\n",
|
| 625 |
+
" \n",
|
| 626 |
+
" if model == 'decision_tree':\n",
|
| 627 |
+
" from sklearn.tree import DecisionTreeClassifier\n",
|
| 628 |
+
" dt = DecisionTreeClassifier()\n",
|
| 629 |
+
" dt.fit(X_train, y_train)\n",
|
| 630 |
+
" y_pred = dt.predict(X_test)\n",
|
| 631 |
+
" model_var = 'decision_tree'\n",
|
| 632 |
+
" return y_pred\n",
|
| 633 |
+
" \n",
|
| 634 |
+
" if model == 'xgboost':\n",
|
| 635 |
+
" from xgboost import XGBClassifier\n",
|
| 636 |
+
" xgb = XGBClassifier()\n",
|
| 637 |
+
" xgb.fit(X_train, y_train)\n",
|
| 638 |
+
" y_pred = xgb.predict(X_test)\n",
|
| 639 |
+
" model_var = 'xgboost'\n",
|
| 640 |
+
" return y_pred\n",
|
| 641 |
+
" \n",
|
| 642 |
+
" else:\n",
|
| 643 |
+
" print('Please choose a model from the following: random_forest, logistic_regression, knn, svm, naive_bayes, decision_tree, xgboost')\n",
|
| 644 |
+
" return None"
|
| 645 |
+
]
|
| 646 |
+
},
|
| 647 |
+
{
|
| 648 |
+
"attachments": {},
|
| 649 |
+
"cell_type": "markdown",
|
| 650 |
+
"metadata": {
|
| 651 |
+
"slideshow": {
|
| 652 |
+
"slide_type": "skip"
|
| 653 |
+
}
|
| 654 |
+
},
|
| 655 |
+
"source": [
|
| 656 |
+
"#### **Evaluation Function**"
|
| 657 |
+
]
|
| 658 |
+
},
|
| 659 |
+
{
|
| 660 |
+
"cell_type": "code",
|
| 661 |
+
"execution_count": 11,
|
| 662 |
+
"metadata": {
|
| 663 |
+
"slideshow": {
|
| 664 |
+
"slide_type": "skip"
|
| 665 |
+
}
|
| 666 |
+
},
|
| 667 |
+
"outputs": [],
|
| 668 |
+
"source": [
|
| 669 |
+
"#define a function that prints the strings below\n",
|
| 670 |
+
"\n",
|
| 671 |
+
"from sklearn.metrics import confusion_matrix, accuracy_score, precision_score, recall_score, f1_score\n",
|
| 672 |
+
"\n",
|
| 673 |
+
"def evaluate_models(model='all'):\n",
|
| 674 |
+
" print('Have the duplicates been removed?', drop_duplicates_var)\n",
|
| 675 |
+
" print('What is the missing values threshold %?', missing_values_threshold_var)\n",
|
| 676 |
+
" print('What is the variance threshold?', variance_threshold_var)\n",
|
| 677 |
+
" print('What is the correlation threshold?', correlation_threshold_var)\n",
|
| 678 |
+
" print('What is the outlier removal threshold?', outlier_var)\n",
|
| 679 |
+
" print('What is the scaling method?', scale_model_var)\n",
|
| 680 |
+
" print('What is the imputation method?', imputation_var) \n",
|
| 681 |
+
" print('What is the imbalance treatment?', imbalance_var)\n",
|
| 682 |
+
"\n",
|
| 683 |
+
" all_models = ['random_forest', 'logistic_regression', 'knn', 'svm', 'naive_bayes', 'decision_tree', 'xgboost']\n",
|
| 684 |
+
" evaluation_score_append = []\n",
|
| 685 |
+
" evaluation_count_append = []\n",
|
| 686 |
+
" \n",
|
| 687 |
+
" for selected_model in all_models:\n",
|
| 688 |
+
" \n",
|
| 689 |
+
" if model == 'all' or model == selected_model:\n",
|
| 690 |
+
"\n",
|
| 691 |
+
" evaluation_score = []\n",
|
| 692 |
+
" evaluation_count = []\n",
|
| 693 |
+
"\n",
|
| 694 |
+
" y_pred = globals()['y_pred_' + selected_model] # Get the prediction variable dynamically\n",
|
| 695 |
+
"\n",
|
| 696 |
+
" def namestr(obj, namespace):\n",
|
| 697 |
+
" return [name for name in namespace if namespace[name] is obj]\n",
|
| 698 |
+
"\n",
|
| 699 |
+
" model_name = namestr(y_pred, globals())[0]\n",
|
| 700 |
+
" model_name = model_name.replace('y_pred_', '') \n",
|
| 701 |
+
"\n",
|
| 702 |
+
" cm = confusion_matrix(y_test, y_pred)\n",
|
| 703 |
+
"\n",
|
| 704 |
+
" # create a dataframe with the results for each model\n",
|
| 705 |
+
"\n",
|
| 706 |
+
" evaluation_score.append(model_name)\n",
|
| 707 |
+
" evaluation_score.append(round(accuracy_score(y_test, y_pred), 2))\n",
|
| 708 |
+
" evaluation_score.append(round(precision_score(y_test, y_pred, zero_division=0), 2))\n",
|
| 709 |
+
" evaluation_score.append(round(recall_score(y_test, y_pred), 2))\n",
|
| 710 |
+
" evaluation_score.append(round(f1_score(y_test, y_pred), 2))\n",
|
| 711 |
+
" evaluation_score_append.append(evaluation_score)\n",
|
| 712 |
+
"\n",
|
| 713 |
+
"\n",
|
| 714 |
+
" # create a dataframe with the true positives, true negatives, false positives and false negatives for each model\n",
|
| 715 |
+
"\n",
|
| 716 |
+
" evaluation_count.append(model_name)\n",
|
| 717 |
+
" evaluation_count.append(cm[0][0])\n",
|
| 718 |
+
" evaluation_count.append(cm[0][1])\n",
|
| 719 |
+
" evaluation_count.append(cm[1][0])\n",
|
| 720 |
+
" evaluation_count.append(cm[1][1])\n",
|
| 721 |
+
" evaluation_count_append.append(evaluation_count)\n",
|
| 722 |
+
"\n",
|
| 723 |
+
" \n",
|
| 724 |
+
" evaluation_score_append = pd.DataFrame(evaluation_score_append, \n",
|
| 725 |
+
" columns=['Model', 'Accuracy', 'Precision', 'Recall', 'F1-score'])\n",
|
| 726 |
+
" \n",
|
| 727 |
+
" \n",
|
| 728 |
+
"\n",
|
| 729 |
+
" evaluation_count_append = pd.DataFrame(evaluation_count_append,\n",
|
| 730 |
+
" columns=['Model', 'True Negatives', 'False Positives', 'False Negatives', 'True Positives'])\n",
|
| 731 |
+
" \n",
|
| 732 |
+
" \n",
|
| 733 |
+
" return evaluation_score_append, evaluation_count_append"
|
| 734 |
+
]
|
| 735 |
+
},
|
| 736 |
+
{
|
| 737 |
+
"attachments": {},
|
| 738 |
+
"cell_type": "markdown",
|
| 739 |
+
"metadata": {
|
| 740 |
+
"slideshow": {
|
| 741 |
+
"slide_type": "skip"
|
| 742 |
+
}
|
| 743 |
+
},
|
| 744 |
+
"source": [
|
| 745 |
+
"### **Input Variables**"
|
| 746 |
+
]
|
| 747 |
+
},
|
| 748 |
+
{
|
| 749 |
+
"cell_type": "code",
|
| 750 |
+
"execution_count": 12,
|
| 751 |
+
"metadata": {
|
| 752 |
+
"slideshow": {
|
| 753 |
+
"slide_type": "skip"
|
| 754 |
+
}
|
| 755 |
+
},
|
| 756 |
+
"outputs": [
|
| 757 |
+
{
|
| 758 |
+
"data": {
|
| 759 |
+
"application/mercury+json": {
|
| 760 |
+
"choices": [
|
| 761 |
+
"yes",
|
| 762 |
+
"no"
|
| 763 |
+
],
|
| 764 |
+
"code_uid": "Select.0.40.16.25-rand87a54245",
|
| 765 |
+
"disabled": false,
|
| 766 |
+
"hidden": false,
|
| 767 |
+
"label": "Drop Duplicates",
|
| 768 |
+
"model_id": "5464c30e15a543b5901a81c32250831b",
|
| 769 |
+
"url_key": "",
|
| 770 |
+
"value": "yes",
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| 771 |
+
"widget": "Select"
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| 772 |
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},
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| 773 |
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| 774 |
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"model_id": "5464c30e15a543b5901a81c32250831b",
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| 775 |
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"version_major": 2,
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| 776 |
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"version_minor": 0
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| 777 |
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},
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| 778 |
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"text/plain": [
|
| 779 |
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"mercury.Select"
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| 780 |
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]
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| 781 |
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},
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| 782 |
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"metadata": {},
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| 783 |
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"output_type": "display_data"
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| 784 |
+
},
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| 785 |
+
{
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| 786 |
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| 787 |
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"application/mercury+json": {
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| 788 |
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"code_uid": "Text.0.40.15.28-rand6e89b88d",
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| 789 |
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"disabled": false,
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| 790 |
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"hidden": false,
|
| 791 |
+
"label": "Missing Value Threeshold",
|
| 792 |
+
"model_id": "1740f68e25d04e1cb3b7768df15d5873",
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| 793 |
+
"rows": 1,
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| 794 |
+
"url_key": "",
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| 795 |
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"value": "80",
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| 796 |
+
"widget": "Text"
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| 797 |
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},
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| 798 |
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"application/vnd.jupyter.widget-view+json": {
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| 799 |
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"model_id": "1740f68e25d04e1cb3b7768df15d5873",
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| 800 |
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"version_major": 2,
|
| 801 |
+
"version_minor": 0
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| 802 |
+
},
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| 803 |
+
"text/plain": [
|
| 804 |
+
"mercury.Text"
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| 805 |
+
]
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| 806 |
+
},
|
| 807 |
+
"metadata": {},
|
| 808 |
+
"output_type": "display_data"
|
| 809 |
+
},
|
| 810 |
+
{
|
| 811 |
+
"data": {
|
| 812 |
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"application/mercury+json": {
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| 813 |
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"code_uid": "Text.0.40.15.31-rand74006b42",
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| 814 |
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"disabled": false,
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| 815 |
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"hidden": false,
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| 816 |
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"label": "Variance Threshold",
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| 817 |
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"model_id": "559d04e880944fd29ca3478a7a4b20ff",
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| 818 |
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"rows": 1,
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"url_key": "",
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| 820 |
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"value": "0",
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| 821 |
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"widget": "Text"
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| 822 |
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},
|
| 823 |
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"application/vnd.jupyter.widget-view+json": {
|
| 824 |
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"model_id": "559d04e880944fd29ca3478a7a4b20ff",
|
| 825 |
+
"version_major": 2,
|
| 826 |
+
"version_minor": 0
|
| 827 |
+
},
|
| 828 |
+
"text/plain": [
|
| 829 |
+
"mercury.Text"
|
| 830 |
+
]
|
| 831 |
+
},
|
| 832 |
+
"metadata": {},
|
| 833 |
+
"output_type": "display_data"
|
| 834 |
+
},
|
| 835 |
+
{
|
| 836 |
+
"data": {
|
| 837 |
+
"application/mercury+json": {
|
| 838 |
+
"code_uid": "Text.0.40.15.34-rand05bb51ec",
|
| 839 |
+
"disabled": false,
|
| 840 |
+
"hidden": false,
|
| 841 |
+
"label": "Correlation Threshold",
|
| 842 |
+
"model_id": "896e1c9e96b04caeb3df77ad7c0c5ff2",
|
| 843 |
+
"rows": 1,
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| 844 |
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"url_key": "",
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| 845 |
+
"value": "1",
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| 846 |
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"widget": "Text"
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| 847 |
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},
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| 848 |
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"application/vnd.jupyter.widget-view+json": {
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| 849 |
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"model_id": "896e1c9e96b04caeb3df77ad7c0c5ff2",
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| 850 |
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"version_major": 2,
|
| 851 |
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"version_minor": 0
|
| 852 |
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},
|
| 853 |
+
"text/plain": [
|
| 854 |
+
"mercury.Text"
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| 855 |
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]
|
| 856 |
+
},
|
| 857 |
+
"metadata": {},
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| 858 |
+
"output_type": "display_data"
|
| 859 |
+
},
|
| 860 |
+
{
|
| 861 |
+
"data": {
|
| 862 |
+
"application/mercury+json": {
|
| 863 |
+
"choices": [
|
| 864 |
+
"none",
|
| 865 |
+
3,
|
| 866 |
+
4,
|
| 867 |
+
5
|
| 868 |
+
],
|
| 869 |
+
"code_uid": "Select.0.40.16.38-randc39f4f69",
|
| 870 |
+
"disabled": false,
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| 871 |
+
"hidden": false,
|
| 872 |
+
"label": "Outlier Removal Threshold",
|
| 873 |
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"data": {
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"application/mercury+json": {
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| 893 |
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"choices": [
|
| 894 |
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"none",
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"normal",
|
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"standard",
|
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"robust"
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],
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|
| 922 |
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"data": {
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| 923 |
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"application/mercury+json": {
|
| 924 |
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"choices": [
|
| 925 |
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"mean",
|
| 926 |
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"median",
|
| 927 |
+
"knn",
|
| 928 |
+
"most_frequent"
|
| 929 |
+
],
|
| 930 |
+
"code_uid": "Select.0.40.16.50-rand00afecfa",
|
| 931 |
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"disabled": false,
|
| 932 |
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"hidden": false,
|
| 933 |
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"label": "Imputation Methods",
|
| 934 |
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"model_id": "15298e99f1ad40469be71f5787356f53",
|
| 935 |
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"url_key": "",
|
| 936 |
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"version_minor": 0
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},
|
| 944 |
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"text/plain": [
|
| 945 |
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"mercury.Select"
|
| 946 |
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]
|
| 947 |
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},
|
| 948 |
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"metadata": {},
|
| 949 |
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"output_type": "display_data"
|
| 950 |
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},
|
| 951 |
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{
|
| 952 |
+
"data": {
|
| 953 |
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"application/mercury+json": {
|
| 954 |
+
"choices": [
|
| 955 |
+
"none",
|
| 956 |
+
"smote",
|
| 957 |
+
"undersampling",
|
| 958 |
+
"rose"
|
| 959 |
+
],
|
| 960 |
+
"code_uid": "Select.0.40.16.55-rand9393c38d",
|
| 961 |
+
"disabled": false,
|
| 962 |
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"hidden": false,
|
| 963 |
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"label": "Imbalance Treatment",
|
| 964 |
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"model_id": "9c2d3e6384a1481ea6dc6f7060404ef8",
|
| 965 |
+
"url_key": "",
|
| 966 |
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|
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| 968 |
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"version_major": 2,
|
| 972 |
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"version_minor": 0
|
| 973 |
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},
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| 974 |
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"text/plain": [
|
| 975 |
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"mercury.Select"
|
| 976 |
+
]
|
| 977 |
+
},
|
| 978 |
+
"metadata": {},
|
| 979 |
+
"output_type": "display_data"
|
| 980 |
+
},
|
| 981 |
+
{
|
| 982 |
+
"data": {
|
| 983 |
+
"application/mercury+json": {
|
| 984 |
+
"choices": [
|
| 985 |
+
"random_forest",
|
| 986 |
+
"logistic_regression",
|
| 987 |
+
"knn",
|
| 988 |
+
"svm",
|
| 989 |
+
"naive_bayes",
|
| 990 |
+
"decision_tree",
|
| 991 |
+
"xgboost"
|
| 992 |
+
],
|
| 993 |
+
"code_uid": "Select.0.40.16.60-rand44169a53",
|
| 994 |
+
"disabled": false,
|
| 995 |
+
"hidden": false,
|
| 996 |
+
"label": "Model Selection",
|
| 997 |
+
"model_id": "081168c57bb84be68f9a62734a7d5520",
|
| 998 |
+
"url_key": "",
|
| 999 |
+
"value": "random_forest",
|
| 1000 |
+
"widget": "Select"
|
| 1001 |
+
},
|
| 1002 |
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"application/vnd.jupyter.widget-view+json": {
|
| 1003 |
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"model_id": "081168c57bb84be68f9a62734a7d5520",
|
| 1004 |
+
"version_major": 2,
|
| 1005 |
+
"version_minor": 0
|
| 1006 |
+
},
|
| 1007 |
+
"text/plain": [
|
| 1008 |
+
"mercury.Select"
|
| 1009 |
+
]
|
| 1010 |
+
},
|
| 1011 |
+
"metadata": {},
|
| 1012 |
+
"output_type": "display_data"
|
| 1013 |
+
}
|
| 1014 |
+
],
|
| 1015 |
+
"source": [
|
| 1016 |
+
"\n",
|
| 1017 |
+
"evaluation_score_df = pd.DataFrame(columns=['Model', 'Accuracy', 'Precision', 'Recall', 'F1-score', 'model_variables'])\n",
|
| 1018 |
+
"evaluation_count_df = pd.DataFrame(columns=['Model', 'True Negatives', 'False Positives', 'False Negatives', 'True Positives', 'model_variables'])\n",
|
| 1019 |
+
"\n",
|
| 1020 |
+
"#############################################################################################################\n",
|
| 1021 |
+
"# reset the dataframe containing all results, evaluation_score_df and evaluation_count_df\n",
|
| 1022 |
+
"\n",
|
| 1023 |
+
"reset_results = 'no' # 'yes' or 'no'\n",
|
| 1024 |
+
"\n",
|
| 1025 |
+
"#############################################################################################################\n",
|
| 1026 |
+
"\n",
|
| 1027 |
+
"if reset_results == 'yes':\n",
|
| 1028 |
+
" evaluation_score_df = pd.DataFrame(columns=['Model', 'Accuracy', 'Precision', 'Recall', 'F1-score', 'model_variables'])\n",
|
| 1029 |
+
" evaluation_count_df = pd.DataFrame(columns=['Model', 'True Negatives', 'False Positives', 'False Negatives', 'True Positives', 'model_variables'])\n",
|
| 1030 |
+
" \n",
|
| 1031 |
+
"\n",
|
| 1032 |
+
"#############################################################################################################\n",
|
| 1033 |
+
"\n",
|
| 1034 |
+
"# input train and test sets\n",
|
| 1035 |
+
"input_train_set = X_train\n",
|
| 1036 |
+
"input_test_set = X_test\n",
|
| 1037 |
+
"\n",
|
| 1038 |
+
"\n",
|
| 1039 |
+
"\n",
|
| 1040 |
+
"# input feature removal variables\n",
|
| 1041 |
+
"input_drop_duplicates = mr.Select(label=\"Drop Duplicates\", value=\"yes\", choices=[\"yes\", \"no\"]) # 'yes' or 'no'\n",
|
| 1042 |
+
"input_drop_duplicates = str(input_drop_duplicates.value)\n",
|
| 1043 |
+
"\n",
|
| 1044 |
+
"input_missing_values_threshold = mr.Text(label=\"Missing Value Threeshold\", value='80') # 0-100 (removes columns with more missing values than the threshold)\n",
|
| 1045 |
+
"input_missing_values_threshold = int(input_missing_values_threshold.value)\n",
|
| 1046 |
+
"\n",
|
| 1047 |
+
"input_variance_threshold = mr.Text(label=\"Variance Threshold\", value='0') # \n",
|
| 1048 |
+
"input_variance_threshold = float(input_variance_threshold.value)\n",
|
| 1049 |
+
"\n",
|
| 1050 |
+
"input_correlation_threshold = mr.Text(label=\"Correlation Threshold\", value='1') # \n",
|
| 1051 |
+
"input_correlation_threshold = float(input_correlation_threshold.value)\n",
|
| 1052 |
+
"\n",
|
| 1053 |
+
"# input outlier removal variables\n",
|
| 1054 |
+
"input_outlier_removal_threshold = mr.Select(label=\"Outlier Removal Threshold\", value=\"none\", choices=['none', 3, 4, 5]) # 'none' or zscore from 0 to 100\n",
|
| 1055 |
+
"\n",
|
| 1056 |
+
"if input_outlier_removal_threshold.value != 'none':\n",
|
| 1057 |
+
" input_outlier_removal_threshold = int(input_outlier_removal_threshold.value)\n",
|
| 1058 |
+
"elif input_outlier_removal_threshold.value == 'none':\n",
|
| 1059 |
+
" input_outlier_removal_threshold = str(input_outlier_removal_threshold.value)\n",
|
| 1060 |
+
"\n",
|
| 1061 |
+
"# input scaling variables\n",
|
| 1062 |
+
"input_scale_model = mr.Select(label=\"Scaling Variables\", value=\"none\", choices=['none', 'normal', 'standard', 'minmax', 'robust']) # 'none', 'normal', 'standard', 'minmax', 'robust'\n",
|
| 1063 |
+
"input_scale_model = str(input_scale_model.value)\n",
|
| 1064 |
+
"\n",
|
| 1065 |
+
"# input imputation variables\n",
|
| 1066 |
+
"input_imputation_method = mr.Select(label=\"Imputation Methods\", value=\"mean\", choices=['mean', 'median', 'knn', 'most_frequent']) # 'mean', 'median', 'knn', 'most_frequent'\n",
|
| 1067 |
+
"input_n_neighbors = 5 # only for knn imputation\n",
|
| 1068 |
+
"input_imputation_method = str(input_imputation_method.value)\n",
|
| 1069 |
+
"\n",
|
| 1070 |
+
"# input imbalance treatment variables\n",
|
| 1071 |
+
"input_imbalance_treatment = mr.Select(label=\"Imbalance Treatment\", value=\"none\", choices=['none', 'smote', 'undersampling', 'rose']) # 'none', 'smote', 'undersampling', 'rose'\n",
|
| 1072 |
+
"input_imbalance_treatment = str(input_imbalance_treatment.value)\n",
|
| 1073 |
+
"\n",
|
| 1074 |
+
"\n",
|
| 1075 |
+
"# input model\n",
|
| 1076 |
+
"input_model = mr.Select(label=\"Model Selection\", value=\"random_forest\", choices=['random_forest', 'logistic_regression', 'knn', 'svm', 'naive_bayes','decision_tree','xgboost']) # 'all', 'random_forest', 'logistic_regression', 'knn', \n",
|
| 1077 |
+
" # 'svm', 'naive_bayes', # 'decision_tree', 'xgboost'\n",
|
| 1078 |
+
"input_model = str(input_model.value)\n"
|
| 1079 |
+
]
|
| 1080 |
+
},
|
| 1081 |
+
{
|
| 1082 |
+
"attachments": {},
|
| 1083 |
+
"cell_type": "markdown",
|
| 1084 |
+
"metadata": {
|
| 1085 |
+
"slideshow": {
|
| 1086 |
+
"slide_type": "skip"
|
| 1087 |
+
}
|
| 1088 |
+
},
|
| 1089 |
+
"source": [
|
| 1090 |
+
"### **Transform Data**"
|
| 1091 |
+
]
|
| 1092 |
+
},
|
| 1093 |
+
{
|
| 1094 |
+
"attachments": {},
|
| 1095 |
+
"cell_type": "markdown",
|
| 1096 |
+
"metadata": {
|
| 1097 |
+
"slideshow": {
|
| 1098 |
+
"slide_type": "skip"
|
| 1099 |
+
}
|
| 1100 |
+
},
|
| 1101 |
+
"source": [
|
| 1102 |
+
"#### **Remove Features**"
|
| 1103 |
+
]
|
| 1104 |
+
},
|
| 1105 |
+
{
|
| 1106 |
+
"cell_type": "code",
|
| 1107 |
+
"execution_count": 13,
|
| 1108 |
+
"metadata": {
|
| 1109 |
+
"slideshow": {
|
| 1110 |
+
"slide_type": "skip"
|
| 1111 |
+
}
|
| 1112 |
+
},
|
| 1113 |
+
"outputs": [
|
| 1114 |
+
{
|
| 1115 |
+
"name": "stdout",
|
| 1116 |
+
"output_type": "stream",
|
| 1117 |
+
"text": [
|
| 1118 |
+
"Shape of the dataframe is: (1175, 590)\n",
|
| 1119 |
+
"the number of columns to be dropped due to duplications is: 104\n",
|
| 1120 |
+
"the number of columns to be dropped due to missing values is: 8\n",
|
| 1121 |
+
"the number of columns to be dropped due to low variance is: 12\n",
|
| 1122 |
+
"the number of columns to be dropped due to high correlation is: 21\n",
|
| 1123 |
+
"Total number of columns to be dropped is: 145\n",
|
| 1124 |
+
"New shape of the dataframe is: (1175, 445)\n",
|
| 1125 |
+
"<class 'list'>\n",
|
| 1126 |
+
"No outliers were removed\n",
|
| 1127 |
+
"The dataframe has not been scaled\n",
|
| 1128 |
+
"The dataframe has not been scaled\n",
|
| 1129 |
+
"Number of missing values before imputation: 19977\n",
|
| 1130 |
+
"Number of missing values after imputation: 0\n",
|
| 1131 |
+
"Number of missing values before imputation: 6954\n",
|
| 1132 |
+
"Number of missing values after imputation: 0\n",
|
| 1133 |
+
"Shape of the training set after no resampling: (1175, 445)\n",
|
| 1134 |
+
"Value counts of the target variable after no resampling: \n",
|
| 1135 |
+
" pass/fail\n",
|
| 1136 |
+
"0 1097\n",
|
| 1137 |
+
"1 78\n",
|
| 1138 |
+
"dtype: int64\n"
|
| 1139 |
+
]
|
| 1140 |
+
}
|
| 1141 |
+
],
|
| 1142 |
+
"source": [
|
| 1143 |
+
"# remove features using the function list_columns_to_drop\n",
|
| 1144 |
+
"\n",
|
| 1145 |
+
"dropped = columns_to_drop(input_train_set, \n",
|
| 1146 |
+
" input_drop_duplicates, input_missing_values_threshold, \n",
|
| 1147 |
+
" input_variance_threshold, input_correlation_threshold)\n",
|
| 1148 |
+
"\n",
|
| 1149 |
+
"# drop the columns from the training and testing sets and save the new sets as new variables\n",
|
| 1150 |
+
"\n",
|
| 1151 |
+
"X_train2 = input_train_set.drop(dropped, axis=1)\n",
|
| 1152 |
+
"X_test2 = input_test_set.drop(dropped, axis=1)\n",
|
| 1153 |
+
"\n",
|
| 1154 |
+
"X_train_dropped_outliers = outlier_removal(X_train2, input_outlier_removal_threshold)\n",
|
| 1155 |
+
"\n",
|
| 1156 |
+
"\n",
|
| 1157 |
+
"X_train_scaled = scale_dataframe(input_scale_model, X_train_dropped_outliers, X_train_dropped_outliers)\n",
|
| 1158 |
+
"X_test_scaled = scale_dataframe(input_scale_model, X_train_dropped_outliers, X_test2)\n",
|
| 1159 |
+
"\n",
|
| 1160 |
+
"# impute the missing values in the training and testing sets using the function impute_missing_values\n",
|
| 1161 |
+
"\n",
|
| 1162 |
+
"X_train_imputed = impute_missing_values(input_imputation_method,X_train_scaled, X_train_scaled, input_n_neighbors)\n",
|
| 1163 |
+
"X_test_imputed = impute_missing_values(input_imputation_method,X_train_scaled, X_test_scaled, input_n_neighbors)\n",
|
| 1164 |
+
"\n",
|
| 1165 |
+
"# treat imbalance in the training set using the function oversample\n",
|
| 1166 |
+
"\n",
|
| 1167 |
+
"X_train_res, y_train_res = imbalance_treatment(input_imbalance_treatment, X_train_imputed, y_train)\n",
|
| 1168 |
+
"\n"
|
| 1169 |
+
]
|
| 1170 |
+
},
|
| 1171 |
+
{
|
| 1172 |
+
"attachments": {},
|
| 1173 |
+
"cell_type": "markdown",
|
| 1174 |
+
"metadata": {
|
| 1175 |
+
"slideshow": {
|
| 1176 |
+
"slide_type": "skip"
|
| 1177 |
+
}
|
| 1178 |
+
},
|
| 1179 |
+
"source": [
|
| 1180 |
+
"### **Model Training**"
|
| 1181 |
+
]
|
| 1182 |
+
},
|
| 1183 |
+
{
|
| 1184 |
+
"cell_type": "code",
|
| 1185 |
+
"execution_count": 14,
|
| 1186 |
+
"metadata": {
|
| 1187 |
+
"slideshow": {
|
| 1188 |
+
"slide_type": "skip"
|
| 1189 |
+
}
|
| 1190 |
+
},
|
| 1191 |
+
"outputs": [],
|
| 1192 |
+
"source": [
|
| 1193 |
+
"# disable warnings\n",
|
| 1194 |
+
"\n",
|
| 1195 |
+
"import warnings\n",
|
| 1196 |
+
"warnings.filterwarnings('ignore')\n",
|
| 1197 |
+
"\n",
|
| 1198 |
+
"# train the model using the function train_model and save the predictions as new variables\n",
|
| 1199 |
+
"\n",
|
| 1200 |
+
"y_pred_random_forest = train_model('random_forest', X_train_res, y_train_res, X_test_imputed, y_test)\n",
|
| 1201 |
+
"y_pred_logistic_regression = train_model('logistic_regression', X_train_res, y_train_res, X_test_imputed, y_test)\n",
|
| 1202 |
+
"y_pred_knn = train_model('knn', X_train_res, y_train_res, X_test_imputed, y_test)\n",
|
| 1203 |
+
"y_pred_svm = train_model('svm', X_train_res, y_train_res, X_test_imputed, y_test)\n",
|
| 1204 |
+
"y_pred_naive_bayes = train_model('naive_bayes', X_train_res, y_train_res, X_test_imputed, y_test)\n",
|
| 1205 |
+
"y_pred_decision_tree = train_model('decision_tree', X_train_res, y_train_res, X_test_imputed, y_test)\n",
|
| 1206 |
+
"y_pred_xgboost = train_model('xgboost', X_train_res, y_train_res, X_test_imputed, y_test)"
|
| 1207 |
+
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"#### **Evaluate and Save**"
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]
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"Have the duplicates been removed? yes\n",
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| 1235 |
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"What is the missing values threshold %? 80\n",
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| 1236 |
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"What is the variance threshold? 0.0\n",
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| 1237 |
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"What is the correlation threshold? 1.0\n",
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| 1238 |
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"What is the outlier removal threshold? none\n",
|
| 1239 |
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"What is the scaling method? none\n",
|
| 1240 |
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"What is the imputation method? mean\n",
|
| 1241 |
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| 1242 |
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| 1267 |
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",
|
| 1348 |
+
"text/plain": [
|
| 1349 |
+
"<Figure size 350x350 with 1 Axes>"
|
| 1350 |
+
]
|
| 1351 |
+
},
|
| 1352 |
+
"metadata": {},
|
| 1353 |
+
"output_type": "display_data"
|
| 1354 |
+
}
|
| 1355 |
+
],
|
| 1356 |
+
"source": [
|
| 1357 |
+
"evaluation_score_output, evaluation_counts_output = evaluate_models(input_model)\n",
|
| 1358 |
+
"\n",
|
| 1359 |
+
"# check if the model has already been evaluated and if not, append the results to the dataframe\n",
|
| 1360 |
+
"\n",
|
| 1361 |
+
"evaluation_score_df = pd.concat([evaluation_score_output, evaluation_score_df], ignore_index=True) \n",
|
| 1362 |
+
"display(pd.DataFrame(evaluation_score_output))\n",
|
| 1363 |
+
"\n",
|
| 1364 |
+
"evaluation_count_df = pd.concat([evaluation_counts_output, evaluation_count_df], ignore_index=True) \n",
|
| 1365 |
+
"display(pd.DataFrame(evaluation_counts_output))\n",
|
| 1366 |
+
"\n",
|
| 1367 |
+
"from mlxtend.plotting import plot_confusion_matrix\n",
|
| 1368 |
+
"\n",
|
| 1369 |
+
"# select the model index and filter the row from evaluation_count_df dataframe\n",
|
| 1370 |
+
"model_index = 0\n",
|
| 1371 |
+
"\n",
|
| 1372 |
+
"selected_model = evaluation_count_df[evaluation_count_df.index == model_index]\n",
|
| 1373 |
+
"\n",
|
| 1374 |
+
"# create a np.array with selected_model values\n",
|
| 1375 |
+
"\n",
|
| 1376 |
+
"\n",
|
| 1377 |
+
"conf_matrix = np.array([[selected_model['True Negatives'].values[0], selected_model['False Positives'].values[0]],\n",
|
| 1378 |
+
" [selected_model['False Negatives'].values[0], selected_model['True Positives'].values[0]]])\n",
|
| 1379 |
+
"\n",
|
| 1380 |
+
"#change the size of the graph\n",
|
| 1381 |
+
"\n",
|
| 1382 |
+
"plt.rcParams['figure.figsize'] = [3.5, 3.5]\n",
|
| 1383 |
+
"\n",
|
| 1384 |
+
"fig, ax = plot_confusion_matrix(\n",
|
| 1385 |
+
" conf_mat=conf_matrix,\n",
|
| 1386 |
+
" show_absolute=True,\n",
|
| 1387 |
+
" show_normed=True\n",
|
| 1388 |
+
")"
|
| 1389 |
+
]
|
| 1390 |
+
},
|
| 1391 |
+
{
|
| 1392 |
+
"attachments": {},
|
| 1393 |
+
"cell_type": "markdown",
|
| 1394 |
+
"metadata": {},
|
| 1395 |
+
"source": [
|
| 1396 |
+
"#### **Plot Evaluation**"
|
| 1397 |
+
]
|
| 1398 |
+
}
|
| 1399 |
+
],
|
| 1400 |
+
"metadata": {
|
| 1401 |
+
"kernelspec": {
|
| 1402 |
+
"display_name": "base",
|
| 1403 |
+
"language": "python",
|
| 1404 |
+
"name": "python3"
|
| 1405 |
+
},
|
| 1406 |
+
"language_info": {
|
| 1407 |
+
"codemirror_mode": {
|
| 1408 |
+
"name": "ipython",
|
| 1409 |
+
"version": 3
|
| 1410 |
+
},
|
| 1411 |
+
"file_extension": ".py",
|
| 1412 |
+
"mimetype": "text/x-python",
|
| 1413 |
+
"name": "python",
|
| 1414 |
+
"nbconvert_exporter": "python",
|
| 1415 |
+
"pygments_lexer": "ipython3",
|
| 1416 |
+
"version": "3.9.16"
|
| 1417 |
+
},
|
| 1418 |
+
"orig_nbformat": 4
|
| 1419 |
+
},
|
| 1420 |
+
"nbformat": 4,
|
| 1421 |
+
"nbformat_minor": 2
|
| 1422 |
+
}
|